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Zhao L., Chen C., Vallino J., Hopkinson C., Beardsley R.C., Lin H., Lerczak J..  2010.  Wetland-estuarine-shelf interactions in the Plum Island Sound and Merrimack River in the Massachusetts coast. Journal of Geophysical Research. 115:1-13.
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Versluis A.J., Pontius, Jr. R.G., Malizia N.R..  2004.  Visualizing the rate at which the accuracy of a land change prediction decays.. Conference proceedings of the meeting of the University Consortium for Geographic Information Science. :29.
Pontius, Jr. R.G., Versluis A.J., Malizia N.R..  2005.  Visualizing the certainty for extrapolations from models of landscape change. Conference proceedings of the meeting of Geocomputation. :6.
Pontius, Jr. R.G., Versluis A.J., Malizia N.R..  2006.  Visualizing certainty of extrapolations from models of land change.. Landscape Ecology. 21:1151-1166.
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Vallino J.J., Huber J.A..  2018.  Using Maximum Entropy Production to Describe Microbial Biogeochemistry Over Time and Space in a Meromictic Pond. Frontiers in Environmental Science.
Vallino J.J., Algar C.K., N. Gonzales F, Huber J.A..  2014.  Use of receding horizon optimal control to solve MaxEP-based biogeochemistry problems. Beyond the Second Law: Entropy Production and Non-Equilibrium Systems. :337-359.
Deegan L.A, Kremer J., Webler T., Brawley J..  2001.  The use of models in integrated resource management in the coastal zone.. Science and Integrated Coastal Management.
Hopkinson C.S., Lugo A.E., Alber M., Covich A., van Bloem S..  2008.  Understanding and forecasting the effects of sea level rise and intense windstorms on coastal and upland ecosystems: the need for a continental-scale netowrk of observatories. Frontiers in Ecology and Environment. 6:255-263.
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Zwart G., Crump B.C., van Agterveld M.P.Kamst-, Hagen F., Han S.K..  2002.  Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of freshwater lakes and rivers.. Aquatic Microbial Ecology. 28:141-155.
Mariotti G., Valentine K., Fagherazzi S..  2015.  Time-dependent behavior of a placed bed of cohesive sediment subjected to erosion and deposition cycles. Ocean Dynamics. 65:287-294.
Feagin A., Forbrich I., Huff T.P., Barr J.G, Ruiz-Plancarte J., Fuentes J.D, NaJJar R.G, Vargas R., Vázquez‐Lule A., L. W‐M. et al..  2020.  Tidal Wetland Gross Primary Production Across the Continental United States, 2000–2019.. Global Biogeochemical Cycles. 34
Feagin A., Forbrich I., Huff T.P., Barr J.G, Ruiz-Plancarte J., Fuentes J.D, NaJJar R.G, Vargas R., Vázquez‐Lule A., L. W‐M. et al..  2020.  Tidal Wetland Gross Primary Production Across the Continental United States, 2000–2019.. Global Biogeochemical Cycles. 34
Helton A.M., Poole G.C., Meyer J.L., Wollheim W.M., Peterson B.J., Mulholland P.J., Bernhardt E.S., Stanford J.A., Arango C., Ashkenas L.R. et al..  2011.  Thinking outside the channel: Modeling nitrogen cycling in networked river ecosystems. Frontiers in Ecology and Environment. 9:229-238.
Vallino J.J., Algar C.K..  2016.  Thermodynamics of Marine Biogeochemical Cycles: Lotka Revisited. Annual Review of Marine Science. 8:333-356.
Hopkinson C.S, Buffam I., Hobbie J., Vallino J., Perdue M., Eversmeyer B., Prahl F., Covert J., Hodson R., Moran M.A. et al..  1998.  Terrestrial inputs of organic matter to coastal ecosystems: An intercomparison of chemical characteristics and bioavailability. Biogeochemistry. 43:211-234.
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Fisher T.R, Correll D., Costanza R., Hollibaugh J., Hopkinson C., Howarth R., Rabalais N., Richey J., Vorosmarty C., Wiegert R..  2000.  Synthesizing drainage basin inputs to coastal systems.. Estuarine Science: A Synthetic Approach to Research and Practice. :81-105.
Deegan L.A., Bowen J.L., Drake D.C., Fleeger J.W., Friedrichs C.T., Galván K.A., Hobbie J.E., Hopkinson C., Johnson D.S., Johnson J.M. et al..  2007.  Susceptibility of salt marshes to nutrient enrichment and predator removal. Ecological Applications. 17:S-42-S63.
Bortolus A, Adam P, Adams JB, Ainouche ML, Ayres D, Bertness MD, Bouma TJ, Bruno JF, Caçador I, Carlton JT et al..  2019.  Supporting \textitSpartina} : Interdisciplinary perspective shows \textitSpartina} as a distinct solid genus. Ecology. 100
Mulholland P.J, Helton A.M, Poole G.C., , Hamilton S.K, Peterson B.J, Tank J.L., Ashkenas L.R., Cooper L.W, Dahm C.N et al..  2008.  Stream denitrification across biomes and its response to anthropogenic nitrate loading. Nature. 452:202-206.
Robison AL, Wollheim WM, Turek B, Bova C, Snay C, Varner RK.  2021.  Spatial and temporal heterogeneity of methane ebullition in lowland headwater streams and the impact on sampling design. Limnology and Oceanography. 66:4063–4076.
Perring A., Williams M., C. Jr. H, Rastetter E., Vallino J..  2000.  Solute dynamics in storm flow of the Ipswich River Basin: Effects of land use.. Biological Bulletin. 199:219-221.
Reeves I.RB, Moore L.J, Valentine K., Fagherazzi S., Kirwan M.L.  2023.  Sediment Exchange Across Coastal Barrier Landscapes Alters Ecosystem Extents. Geophysical Research Letters. 5017(143)
Pontius, Jr. R.G., Claessens L., Hopkinson C., Marzouk A., Rastetter E.B., Schneider L.C., Vallino J..  2000.  Scenarios of land-use change and nitrogen release in the Ipswich watershed, Massachusetts, USA. Proceedings of the 4th International Conference on Integrating Geographic Information Systems and Environmental Modeling: Problems, prospects, and Needs for Research.
Wilson C.A., Hughes Z.J., FitzGerald D.M., Hopkinson C.S., Valentine V., Kolker A.S..  2014.  Saltmarsh pool and tidal creek morphodynamics: Dynamic equilibrium of northern latitude saltmarshes? Geomorphology. :99-115.
Torres R., Fagherazzi S., van Proosdij D., Hopkinson C..  2006.  Salt marsh geomorphology: Physical and ecological effects on landform. Estuarine, Coastal and Shelf Science. 69:309-310.

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