PIE LTER Publications

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Journal Article
Vallino J., Hopkinson C.S., Garritt R.H..  2005.  Estimating estuarine gross production, community respiration and net ecosystem production: A nonlinear inverse technique.. Ecological Modeling. 187:281-296.
Pontius, Jr. R.G., Agrawal A., Huffaker D..  2003.  Estimating the uncertainty of land-cover extrapolations while constructing a raster map from tabular data.. Journal of Gegraphical Systems. 5:253-273.
Vallino J.J, Hopkinson C.S..  1998.  Estimation of dispersion and characteristic mixing times in Plum Island Sound Estuary. Estuarine, Coastal and Shelf Science. 46:333-350.
Smith J.S., Mather M.E., Frank H.J., Muth R.M., Finn J.T., McCormick S.D..  2009.  Evaluation of a gastric radio tag insertion technique for anadromous river herring.. North American Journal of Fisheries Management. 29:367-377.
Haas H.L., Freeman C.J., Logan J.M., Deegan L, Gaines E.F..  2009.  Examining mummichog growth and movement: Are some individuals making intra-season migrations to optimize growth? Journal of Experimental Marine Biology and Ecology. 369:8-16.
Zhang X., Leonardi N., Donatelli C., Fagherazzi S..  2019.  Fate of cohesive sediments in a marsh-dominated estuary. Advances in Water Resources. 125:32-40.
Nelson J.A., Johnson D.S., Deegan L.A., Spivak A.C., Sommer N.R..  2018.  Feedbacks Between Nutrient Enrichment and Geomorphology Alter Bottom-Up Control on Food Webs. Ecosystems.
Johnson D.S., Martinez-Soto K.S., Pant M., Wittyngham S.S, Goetz E.M..  2020.  The fiddler crab Minuca pugnax () (Decapoda: Brachyura: Ocypodidae) reduces saltmarsh algae in its expanded range . Journal of Crustacean Biology.
Johnson D.S., Crowley C., Longmire K., Nelson J.A., Williams B., Wittyngham S..  2019.  The fiddler crab, Minuca pugnax, follows Bergmann’s rule.. Ecology and Evolution. 9:14489-14497.
Johnson D.S..  2014.  Fiddler on the roof: a northern range extension for the marsh fiddler crab Uca pugnax. Journal of Crustacean Biology. 34:671-673.
Acinas S.G., Klepac-Ceraj K., Hunt D.E., Pharino C., Ceraj C., Distel D.L., Polz M.F..  2004.  Fine-scale phylogenetic architecture of a complex bacterial community.. Nature. 430:551-554.
Smith J.M., Wells S.P., Mather M.E., Muth R.M..  2013.  Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear.. Aquatic Conservation: Marine and Freshwater Ecosystems.
Nielsen J.L., Schramm A., Bernhard A.E., EnghG.J. vanden, Stahl D.A..  2004.  Flow Cytometry-Assisted Cloning of Specific Sequence Motifs from Complex 16S rRNA Gene Libraries. Applied and Environmental Microbiology. 70:7550-7554.
Crosby S.C., Ivens-Duran M., Bertness M.D., Davey E., Deegan L.A., Leslie H.M..  2015.  Flowering and biomass allocation in U.S. Atlantic coast Spartina alterniflora. American Journal of Botany. 102
Stewart L.C., Algar C.K., Fortunato C.S., Larson B.I., Vallino J.J., Huber J.A., Butterfield D.A., Holden J.F..  2019.  Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents. ISME.
Meybeck M., Vorosmarty C.J..  2005.  Fluvial filtering of land to ocean fluxes: from Holocene variations to Anthrocene.. Compte Rendus. 337:107-123.
Fagherazzi S., Wiberg P.L., Temmerman S., Struyf E., Zhao Y., Raymond P.A.  2013.  Fluxes of water, sediments, and biogeochemical compounds in salt marshes. Ecological Processes.
Avolio M.L, La Pierre K.J., Houseman G.R., Koerner S.E., Grman E., Isbell F., Johnson D.S., Wilcox K.R..  2015.  A framework for quantifying the magnitude and variability of community responses to global change drivers. Ecosphere. 6
Graves C.J., Makrides E., Schmidt V., Giblin A.E., Cardon Z.G., Rand D.M..  2016.  Functional responses of salt marsh microbial communities to long-term nutrient enrichment. Applied and Environmental Microbiology. 82:2862-2871.
Bernhard A.E., Tucker J., Giblin A.E., Stahl D.A..  2007.  Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environmental Microbiology. 9:1439-1447.
Raymond P.A, Cole J.J..  2001.  Gas exchange in rivers and estuaries: Choosing a gas transfer velocity. Estuaries. 24:312-217.
Thompson J.R., Pacocha S., Pharino C., Klepac-Ceraj V., Hunt D.E., Benoit J., Sarma-Rupavtarm R., Distel D.L., Polz M.F..  2005.  Genotypic diversity within a natural coastal bacterioplankton population.. Science. 307:1311-1313.
Smith M.D., La Pierre K.J., Collins S.L., Knapp A.K., Gross K.L., Barrett J.E., Frey S.D., Gough L., Miller R.J., Morris J.T. et al..  2015.  Global environmental change and the nature of aboveground net primary productivity responses: insights from long‑term experiments. Oecologia.
Wollheim W.M., Vorosmarty C.J., Bouwman A.F., Green P.A., Harrison J., Linder E., Peterson B.J., Green P.A., Seitzinger S., Syvitski J.P.M..  2008.  Global N removal by freshwater aquatic systems A spatially distributed, within-basin approach. Global Biogeochemical Cycles. 22
Spivak A.C., Sanderman J., Bowen J.L., Canuel E.A., Hopkinson C.S..  2019.  Global-change controls on soil-carbon accumulation and loss in coastal vegetated ecosystems. Nature Geoscience. 12:685-692.

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