PIE LTER Publications

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Journal Article
Lockfield K., Fleeger J.W., Deegan L.A..  2013.  Mummichog, Fundulus heteroclitus, responses to long-term, whole-ecosystem nutrient enrichment.. Marine Ecological Progress Series. 492:211-222.
Chowdhury R., Larson K., Grove M., Polsky C., Cook E., Onsted J., Ogden L.  2011.  A Multi-Scalar Approach to Theorizing Socio-Ecological Dynamics of Urban Residential Landscapes. Cities and the Environment . 4
Neckles H., Dionne M., Burdick D., Buchsbaum R., Diers T., Hutchins E., Roman C..  2002.  A monitoring protocol to assess tidal restoration of salt marshes on local and regional scales. Restoration Ecology. 10:556-563.
Bahr M., Crump B.C., Klepac-Ceraj V., Teske A.P., Sogin M.L., Hobbie J.E..  2005.  Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.. Environmental Microbiology. 7:1175-1185.
Kirkby R., Claessens L., , Rastetter E., Vallino J..  2000.  Modeling the effects of land-use change on nitrogen biogeochemistry in the Ipswich watershed, Massachusetts. Biological Bulletin. 199:218-219.
Mariotti G., Fagherazzi S..  2012.  Modeling the effect of tides and waves on benthic biofilms.. Journal of Geophysical Research. 117
Filoso S., Vallino J.J, Hopkinson C., Rastetter E., Claessens L..  2004.  Modeling Nitrogen Transport in the Ipswich River Basin, Massachusetts, Using HSPF.. Journal of the American Water Resources Association. 40:1365-1384.
Vallino J.J..  2003.  Modeling microbial consortiums as distributed metabolic networks. Biological Bulletin. 204:174-179.
Schneider L., Pontius, Jr. R.G..  2001.  Modeling land-use change in the Ipswich watershed, Massachusetts, USA. Agriculture, Ecosystems & Environment. 85:83-94.
Fennel K., Brady D., DiToro D., Fulweiler R.W., Gardner W.S., Giblin A., McCarthy M.J., Rao A., Seitzinger S., Thouvenot-Korppoo M. et al..  2009.  Modeling denitrification in aquatic sediments. Biogeochemistry. 93:159-178.
Bowen J.L., Ward B.B., Morrison H.G., Hobbie J.E., Valiela I., Deegan L.A., Sogin M.L..  2011.  Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment. The ISME Journal. 5:1540-1548.
Crump B.C., Hopkinson C.S., Sogin M.L., Hobbie J.H..  2004.  Microbial biogeography along an estuarine salinity gradient: the combined influences of bacterial growth and residence time.. Applied and Environmental Microbiology. 70:1494-1505.
Moulton O.M., Altabet M.A., Beman J.M., Deegan L.A., Lloret J., Lyons M.K., Nelson J.A., Pfister C.A..  2016.  Microbial associations with macrobiota in coastal ecosystems: patterns and implications for nitrogen cycling. Frontiers in Ecology and the Environment. 14:200-208.
Hobbie J.E., Hobbie E.A..  2013.   Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates. Frontiers in Terrestrial Microbiology.
Pontius, Jr. R.G., Krithivasan R., Sauls L., Yan Y., Zhang Y..  2017.  Methods to summarize change among land categories across time intervals. Journal of Land Use Science. 12:218-230.
Briggs M.A., Gooseff M.N., Arp C.D., Baker M.A..  2009.  A method for estimating surface transient storage parameters for streams with concurrent hyporheic storage. Water Resources Research. 45
Gardner L.R., Gaines E.F..  2008.  A method for estimating pore water drainage from marsh soils using rainfall and well records. Estuarine, Coastal and Shelf Science. 79:51-58.
Preheim S.P., Boucher Y., Woldschutte H., David L.A., Veneziano D., Alm E.J., Polz M.F..  2011.  Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environmental Microbiology. 13:265-275.
Bulseco A.N., Vineis J.H., Murphy A.E., Spivak A.C., Giblin A.E., Tucker J., Bowen J.L..  2019.  Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments.. Limnology and Oceanography. 65
Runfola D.S.M., Pontius, Jr. R.G..  2013.  Measuring the temporal instability of land change using the Flow matrix. International Journal of Geographical Information Science.
Forbrich I., Giblin A.E..  2015.  Marsh-atmosphere exchange of CO2 in a New England salt marsh. Journal of Geophysical Research- Biogeosciences. 120
Krest J.M, Moore W.S., Gardner L.R., Morris J.T..  2000.  Marsh nutrient export supplied by ground water discharge: Evidence from radium measurements. Global Biogeochemical Cycles. 14:167-176.
Aldwaik S., Pontius, Jr. R.G..  2013.  Map errors that could account for deviations from a uniform intensity of land change. International Journal of Geographical Information Science .
Dodds W.K., Webster J.R, Crenshaw C., Helton A.M., O'Brien J.M., Marti E., Hershey A.E., Tank J.L., Burgin A.J., Grimm N.B. et al..  2014.  The Lotic Intersite Nitrogen Experiments: an example of successful ecological research collaboration.. Freshwater Science. 33:700-710.
Bernhard A., Donn T.M., Giblin A.E., Stahl D.A..  2005.  Loss of Diversity of Ammonia-Oxidizing Bacteria Correlates with Increasing Salinity in an Estuary System.. Environmental Microbiology. 7:1289-1297.

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