Habitat-biotic interactions. Estuarine Science: A Synthetic Approach to Research and Practice. :427-460.. 2000.
Interaction between physical processes and ecosystem structure: A comparative approach.. Estuarine Science: A Synthetic Approach to Research and Practice. :177-206.. 2000.
Linking biogeochemical processes to higher trophic levels. Estuarine Science, A Synthetic Approach to Research and Practice. :299-246.. 2000.
Macro-scale models of water and nutrient flux to the coastal zone. Estuarine Science: A Synthetic Approach to Research and Practice. :43-80.. 2000.
Marsh Equilibrium Theory: Implications for Responses to Rising Sea Level. Salt Marshes: Function, Dynamics, and Stresses. :157–177.. 2021.
Modelling Tidal Environments. Treatise on Geomorphology (Second Edition). :62–82.. 2022.
The Mounting Risk of Drought in a Humid Landscape: Structure and Agency in Suburbanizing Massachusetts. . Sustainable Communities on a Sustainable Planet: The Human-Environment Regional Observatory Project.. 2009.
Mysteries in the marsh. Long-Term Ecological Research: Changing the Nature of Scientists.. 2015.
Nitrogen Dynamics of Coastal Salt Marshes. Nitrogen in the Marine Environment, 2nd Edition. :991-1036.. 2008.
Perspectives on a 30-Year Career of Salt Marsh Research. Long-Term Environmental Research: Changing the Nature of Scientists.. 2015.
The Role of Marshes in Coastal Nutrient Dynamics and Loss. Salt Marshes: Function, Dynamics, and Stresses. :113–154.. 2021.
The Role of Models in Addressing Coastal Eutrophication Problems. The Role of Models in Ecosystems Science. :327-343.. 2003.
Salt marsh ecosystem support of marine transient species.. Concepts and Controversies in Tidal Marsh Ecology. :333-365.. 2000.
Scenarios of land-use change and nitrogen release in the Ipswich watershed, Massachusetts, USA. Proceedings of the 4th International Conference on Integrating Geographic Information Systems and Environmental Modeling: Problems, prospects, and Needs for Research.. 2000.
South Atlantic Tidal Wetlands. Wetland Habitats of North America: Ecology and Conservation Concerns. :45-61.. 2012.
Synthesizing drainage basin inputs to coastal systems.. Estuarine Science: A Synthetic Approach to Research and Practice. :81-105.. 2000.
Understanding Marsh Dynamics: Modeling Approaches. Salt Marshes: Function, Dynamics, and Stresses. :278–299.. 2021.
The use of models in integrated resource management in the coastal zone.. Science and Integrated Coastal Management.. 2001.
Use of receding horizon optimal control to solve MaxEP-based biogeochemistry problems. Beyond the Second Law: Entropy Production and Non-Equilibrium Systems. :337-359.. 2014.
Competition among marsh macrophytes by means of vertical geomorphological displacement. Third International Conference on Invasive Spartina. :109-115.. 2010.
Expanding the conceptual, mathematical, and practical methods for map comparison. Conference proceedings of the meeting of Spatial Accuracy 2006. :16.. 2006.
Improvements in the use of the ROC statistic for landscape ecology. Conference proceedings of the World Congress of the International Association for Landscape Ecology. :2.. 2007.
Visualizing the certainty for extrapolations from models of landscape change. Conference proceedings of the meeting of Geocomputation. :6.. 2005.
Bird use of Phragmites australis in coastal marshes of northern Massachusetts.. Proceedings of the 1st National Conference on Marine Bioinvasions. Jan 24-27, 1999:232-240.. 2000.
Effects of changes in sea level and productivity on the stability of intertidal marshes.. UNESCO Proceeding Series on Lagoons and Coastal Wetlands in the Global Change Context: Impact and Management Issues. :121-127.. 2005.