Macro-scale models of water and nutrient flux to the coastal zone. Estuarine Science: A Synthetic Approach to Research and Practice. :43-80.. 2000.
Marsh nutrient export supplied by ground water discharge: Evidence from radium measurements. Global Biogeochemical Cycles. 14:167-176.. 2000.
Modeling the effects of land-use change on nitrogen biogeochemistry in the Ipswich watershed, Massachusetts. Biological Bulletin. 199:218-219.. 2000.
Modeling land-use change in the Ipswich watershed, Massachusetts, USA. Agriculture, Ecosystems & Environment. 85:83-94.. 2001.
A monitoring protocol to assess tidal restoration of salt marshes on local and regional scales. Restoration Ecology. 10:556-563.. 2002.
Modeling microbial consortiums as distributed metabolic networks. Biological Bulletin. 204:174-179.. 2003.
Microbial biogeography along an estuarine salinity gradient: the combined influences of bacterial growth and residence time.. Applied and Environmental Microbiology. 70:1494-1505.. 2004.
Modeling Nitrogen Transport in the Ipswich River Basin, Massachusetts, Using HSPF.. Journal of the American Water Resources Association. 40:1365-1384.. 2004.
Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.. Environmental Microbiology. 7:1175-1185.. 2005.
A method for estimating pore water drainage from marsh soils using rainfall and well records. Estuarine, Coastal and Shelf Science. 79:51-58.. 2008.
A method for estimating surface transient storage parameters for streams with concurrent hyporheic storage. Water Resources Research. 45. 2009.
Modeling denitrification in aquatic sediments. Biogeochemistry. 93:159-178.. 2009.
The Mounting Risk of Drought in a Humid Landscape: Structure and Agency in Suburbanizing Massachusetts. . Sustainable Communities on a Sustainable Planet: The Human-Environment Regional Observatory Project.. 2009.
Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environmental Microbiology. 13:265-275.. 2011.
Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment. The ISME Journal. 5:1540-1548.. 2011.
A Multi-Scalar Approach to Theorizing Socio-Ecological Dynamics of Urban Residential Landscapes. Cities and the Environment . 4. 2011.
Modeling the effect of tides and waves on benthic biofilms.. Journal of Geophysical Research. 117. 2012.
Map errors that could account for deviations from a uniform intensity of land change. International Journal of Geographical Information Science .. 2013.
Measuring the temporal instability of land change using the Flow matrix. International Journal of Geographical Information Science.. 2013.
Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates. Frontiers in Terrestrial Microbiology.. 2013.