PIE LTER Publications

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Thesis
Shmookler R..  2010.  Modeling water use in the metropolitan area planning council region. MS Degree
Leonardi N..  2015.  Modeling the effect of Marine Processes on Deltaic Wetland. PhD
Parker D..  2002.  A method to produce hydrologically corrected DEMs. M.S.
Software
Vallino J.J..  2020.  maxEntropyProd/MEP-SidersPond: Release of Fortran code associated with published paper.
VAllini J.J..  2020.  maxEntropyProd/MEP-AutoHetDet: Release of Fortran code associated with paper.
Vallino J.J..  2020.  maxEntropyProd/MEP-AutoHetDet: Release of Fortran code associated with paper.
Report
Buchsbaum R., Purinton T., Magnusson B..  2002.  The marine resources of the Parker River-Plum Island Sound estuary: An update after 30 years.
Allee R.J., Dethier M., Brown D., Deegan L., Ford R.G., Hourigan T.F., Maragos J., Schoch C., Sealey K., Twilley R. et al..  2000.  Marine and Estuarine Ecosystem and Habitat Classification.
Journal Article
Lockfield K., Fleeger J.W., Deegan L.A..  2013.  Mummichog, Fundulus heteroclitus, responses to long-term, whole-ecosystem nutrient enrichment.. Marine Ecological Progress Series. 492:211-222.
Chowdhury R., Larson K., Grove M., Polsky C., Cook E., Onsted J., Ogden L.  2011.  A Multi-Scalar Approach to Theorizing Socio-Ecological Dynamics of Urban Residential Landscapes. Cities and the Environment . 4
Zhang W, Zhang X, Huang H, Wang Y, Fagherazzi S.  2020.  On the morphology of radial sand ridges. Earth Surface Processes and Landforms. 45:2613–2630.
Neckles H., Dionne M., Burdick D., Buchsbaum R., Diers T., Hutchins E., Roman C..  2002.  A monitoring protocol to assess tidal restoration of salt marshes on local and regional scales. Restoration Ecology. 10:556-563.
Bahr M., Crump B.C., Klepac-Ceraj V., Teske A.P., Sogin M.L., Hobbie J.E..  2005.  Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.. Environmental Microbiology. 7:1175-1185.
Kirkby R., Claessens L., , Rastetter E., Vallino J..  2000.  Modeling the effects of land-use change on nitrogen biogeochemistry in the Ipswich watershed, Massachusetts. Biological Bulletin. 199:218-219.
Mariotti G., Fagherazzi S..  2012.  Modeling the effect of tides and waves on benthic biofilms.. Journal of Geophysical Research. 117
Xu Y, Kalra TS, Ganju NK, Fagherazzi S.  2022.  Modeling the Dynamics of Salt Marsh Development in Coastal Land Reclamation. Geophysical Research Letters. 49:e2021GL095559.
Filoso S., Vallino J.J, Hopkinson C., Rastetter E., Claessens L..  2004.  Modeling Nitrogen Transport in the Ipswich River Basin, Massachusetts, Using HSPF.. Journal of the American Water Resources Association. 40:1365-1384.
Vallino J.J..  2003.  Modeling microbial consortiums as distributed metabolic networks. Biological Bulletin. 204:174-179.
Schneider L., Pontius, Jr. R.G..  2001.  Modeling land-use change in the Ipswich watershed, Massachusetts, USA. Agriculture, Ecosystems & Environment. 85:83-94.
Fennel K., Brady D., DiToro D., Fulweiler R.W., Gardner W.S., Giblin A., McCarthy M.J., Rao A., Seitzinger S., Thouvenot-Korppoo M. et al..  2009.  Modeling denitrification in aquatic sediments. Biogeochemistry. 93:159-178.
Roy MS, Byrnes JEK, Mavrommati G.  2024.  Mitigation policies buffer multiple climate stressors in a socio-ecological salt marsh habitat. Sustainability Science. 19(1):245-258.
Liu Z, Fagherazzi S, Li J, Cui B.  2021.  Mismatch between watershed effects and local efforts constrains the success of coastal salt marsh vegetation restoration. Journal of Cleaner Production. 292:126103.
Bowen J.L., Ward B.B., Morrison H.G., Hobbie J.E., Valiela I., Deegan L.A., Sogin M.L..  2011.  Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment. The ISME Journal. 5:1540-1548.
Vineis JH, Bulseco AN, Bowen JL.  2023.  Microbial chemolithoautotrophs are abundant in salt marsh sediment following long-term experimental nitrate enrichment. FEMS Microbiology Letters. 370(12881)
Crump B.C., Hopkinson C.S., Sogin M.L., Hobbie J.H..  2004.  Microbial biogeography along an estuarine salinity gradient: the combined influences of bacterial growth and residence time.. Applied and Environmental Microbiology. 70:1494-1505.

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