@conference {8841,
	title = {FEEDING SALT MARSHES WITH COASTAL STORMS},
	booktitle = {Coastal Sediments 2023Coastal Sediments 2023},
	year = {2023},
	publisher = {WORLD SCIENTIFIC},
	organization = {WORLD SCIENTIFIC},
	address = {New Orleans, LA, USA},
	isbn = {978-981-12-7989-8},
	doi = {10.1142/1335810.1142/9789811275135_0228},
	url = {https://www.worldscientific.com/worldscibooks/10.1142/13358},
	author = {Wang, Ping and Royer, Elizabeth and Rosati, Julie D and Fagherazzi, Sergio and CORTESE, LUCA}
}
@article {8842,
	title = {A fiddler crab reduces plant growth in its expanded range},
	journal = {Ecology},
	volume = {104310},
	year = {2023},
	month = {Dec-12-2023},
	issn = {0012-9658},
	doi = {10.1002/ecy.4203},
	url = {https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4203},
	author = {Mart{\'\i}nez-Soto, Kayla S. and Johnson, David S.}
}
@article {strzempko_flow_2023,
	title = {The Flow Matrix Offers a Straightforward Alternative to the Problematic Markov Matrix},
	journal = {Land},
	volume = {12},
	year = {2023},
	pages = {1471},
	abstract = {The Flow matrix is a novel method to describe and extrapolate transitions among categories. The Flow matrix extrapolates a constant transition size per unit of time on a time continuum with a maximum of one incident per observation during the extrapolation. The Flow matrix extrapolates linearly until the persistence of a category shrinks to zero. The Flow matrix has concepts and mathematics that are more straightforward than the Markov matrix. However, many scientists apply the Markov matrix by default because popular software packages offer no alternative to the Markov matrix, despite the conceptual and mathematical challenges that the Markov matrix poses. The Markov matrix extrapolates a constant transition proportion per time interval during whole-number multiples of the duration of the calibration time interval. The Markov extrapolation allows at most one incident per observation during each time interval but allows repeated incidents per observation through sequential time intervals. Many Markov extrapolations approach a steady state asymptotically through time as each category size approaches a constant. We use case studies concerning land change to illustrate the characteristics of the Flow and Markov matrices. The Flow and Markov extrapolations both deviate from the reference data during a validation time interval, implying there is no reason to prefer one matrix to the other in terms of correspondence with the processes that we analyzed. The two matrices differ substantially in terms of their underlying concepts and mathematical behaviors. Scientists should consider the ease of use and interpretation for each matrix when extrapolating transitions among categories.},
	keywords = {category, extrapolation, flow, land change, Markov, model},
	issn = {2073-445X},
	doi = {10.3390/land12071471},
	url = {https://www.mdpi.com/2073-445X/12/7/1471},
	author = {Strzempko, Jessica and Pontius, Robert Gilmore}
}
@article {viana_four_2023,
	title = {Four Fundamental Questions to Evaluate Land Change Models with an Illustration of a Cellular Automata{\textendash}Markov Model},
	journal = {Annals of the American Association of Geographers},
	volume = {113},
	year = {2023},
	pages = {2497{\textendash}2511},
	abstract = {Numerous models exist for users to simulate land change to communicate with an audience concerning future land change. This article raises four fundamental questions to help model users decide whether to use any model: (1) Can the user understand the model? (2) Can the audience understand the model? (3) Can the user control the model? (4) Does the model address the goals of the specific application? This article applies these questions to the popular cellular automata{\textendash}Markov (CA{\textendash}Markov) model as IDRISI{\textquoteright}s CA{\textendash}Markov module expresses. Sensitivity analysis examines 120 ways to set the module{\textquoteright}s parameters. Verification compares the module{\textquoteright}s behavior to the software{\textquoteright}s documentation. Results show that the cellular automata{\textquoteright}s allocation fails to follow the quantity of change that the Markov module computes. The module{\textquoteright}s behavior is likely to cause users to misinterpret the validation metrics and to miscommunicate with audiences. Thus, the answers to the four questions were not satisfactory for this article{\textquoteright}s case study. This article{\textquoteright}s framework helps users to judge a model{\textquoteright}s appropriateness for a specific application by combining sensitivity analysis with verification in a manner that helps to interpret validation. Users should answer the four questions as they decide whether to use any software{\textquoteright}s modules.},
	keywords = {an{\'a}lisis de sensibilidad, CA-Markov, CA{\textendash}Markov, IDRISI software, IDRISI软件, sensitivity analysis, software IDRISI, validaci{\'o}n, Validation, verificaci{\'o}n, verification, 敏感性分析, 确认, 验证},
	issn = {2469-4452},
	doi = {10.1080/24694452.2023.2232435},
	url = {https://doi.org/10.1080/24694452.2023.2232435},
	author = {Viana, Cl{\'a}udia M. and Pontius Jr., Robert Gilmore and Rocha, Jorge}
}
@article {8776,
	title = {Frequent Storm Surges Affect the Groundwater of Coastal Ecosystems},
	journal = {Geophysical Research Letters},
	volume = {501815},
	year = {2023},
	month = {Apr-01-2024},
	issn = {0094-8276},
	doi = {10.1029/2022GL100191},
	url = {https://onlinelibrary.wiley.com/doi/10.1029/2022GL100191},
	author = {Nordio, Giovanna and Frederiks, Ryan and Hingst, Mary and Carr, Joel and Kirwan, Matt and Gedan, Keryn and Michael, Holly and Fagherazzi, Sergio}
}
@article {cortese_fetch_2022,
	title = {Fetch and distance from the bay control accretion and erosion patterns in Terrebonne marshes (Louisiana, USA)},
	journal = {Earth Surface Processes and Landforms},
	volume = {47},
	year = {2022},
	pages = {1455{\textendash}1465},
	abstract = {Wetlands in the Mississippi River Delta are rapidly degrading. Sea level rise and low sediment supply are widely recognized as the two main factors contributing to land-to-water conversion. To determine what marsh areas are more resilient, it is fundamental to identify the drivers that regulate marsh accretion and degradation. In this study, a combination of field data and aerial images is used to determine these drivers in Terrebonne Bay, Louisiana, USA. We find that accretion and degradation patterns depend on whether the marsh is located inland in a sheltered area or facing open water. In the first case, the distance to the nearby channel is important, because during flooding of the marsh platform more sediment is deposited in the proximity of channel banks. The accretion rates of marshes facing open water are high and correlate to fetch, a proxy for the ability of waves to resuspend bottom sediment. These areas are more resilient to sea level rise, but waves are also the main mechanism of degradation, as these marshes tend to degrade by edge erosion. Consequently, we propose a bimodal evolution trajectory of the marshes in Terrebonne Bay: marshes close to the bay and facing open water accrete rapidly but are affected by lateral erosion due to waves, whereas sheltered marshes accrete slowly and degrade in large swathes due to insufficient sediment supply.},
	keywords = {CRMS, marsh accretion, marsh erosion, Mississippi River Delta Plain, waves},
	issn = {1096-9837},
	doi = {10.1002/esp.5327},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/esp.5327},
	author = {CORTESE, LUCA and Fagherazzi, Sergio}
}
@article {PIE501,
	title = {The fiddler crab Minuca pugnax () (Decapoda: Brachyura: Ocypodidae) reduces saltmarsh algae in its expanded range },
	journal = {Journal of Crustacean Biology},
	year = {2020},
	note = {PI Plum Data},
	keywords = {LTER-PIE},
	doi = {10.1093/jcbiol/ruaa073},
	author = {Johnson, D.S. and Martinez-Soto, K.S. and Pant, M. and Wittyngham, S.S and Goetz, E.M.}
}
@article {sills_fisheries_2020,
	title = {Fisheries rely on threatened salt marshes},
	journal = {Science},
	volume = {370},
	number = {6517},
	year = {2020},
	month = {nov},
	pages = {670{\textendash}671},
	issn = {0036-8075, 1095-9203},
	doi = {10.1126/science.abe9332},
	url = {https://www.science.org/doi/10.1126/science.abe9332},
	author = {Baker, Ronald and Taylor, Matthew D. and Able, Kenneth W. and Beck, Michael W. and Cebrian, Just and Colombano, Denise D. and Connolly, Rod M. and Currin, Carolyn and Deegan, Linda A. and Feller, Ilka C. and Gilby, Ben L. and Kimball, Matthew E. and Minello, Thomas J. and Rozas, Lawrence P. and Simenstad, Charles and Turner, R. Eugene and Waltham, Nathan J. and Weinstein, Michael P. and Ziegler, Shelby L. and zu Ermgassen, Philine S.E. and Alcott, Caitlin and Alford, Scott B. and Barbeau, Myriam A. and Crosby, Sarah C. and Dodds, Kate and Frank, Alyssa and Goeke, Janelle and Goodridge Gaines, Lucy A. and Hardcastle, Felicity E. and Henderson, Christopher J. and James, W. Ryan and Kenworthy, Matthew D. and Lesser, Justin and Mallick, Debbrota and Martin, Charles W. and McDonald, Ashley E. and McLuckie, Catherine and Morrison, Blair H. and Nelson, James A. and Norris, Gregory S. and Ollerhead, Jeff and Pahl, James W. and Ramsden, Sarah and Rehage, Jennifer S. and Reinhardt, James F. and Rezek, Ryan J. and Risse, L. Mark and Smith, Joseph A.M. and Sparks, Eric L. and Staver, Lorie W.},
	editor = {Sills, Jennifer}
}
@article {zhang_fate_2019,
	title = {Fate of cohesive sediments in a marsh-dominated estuary},
	journal = {Advances in Water Resources},
	volume = {125},
	year = {2019},
	month = {mar},
	pages = {32{\textendash}40},
	issn = {03091708},
	doi = {10.1016/j.advwatres.2019.01.003},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0309170818305566},
	author = {Zhang, Xiaohe and Leonardi, Nicoletta and Donatelli, Carmine and Fagherazzi, Sergio}
}
@article {PIE463,
	title = {Fate of cohesive sediments in a marsh-dominated estuary},
	journal = {Advances in Water Resources},
	volume = {125},
	year = {2019},
	note = {Grad},
	pages = {32-40},
	keywords = {disturbance, LTER-PIE, numerical modelling, ponds expansion, salt marshes, sediment exchange, trapping capacity},
	doi = {10.1016/j.advwatres.2019.01.003},
	author = {Zhang, X. and Leonardi, N. and Donatelli, C. and Fagherazzi, S.}
}
@article {nelson_feedbacks_2019,
	title = {Feedbacks {Between} {Nutrient} {Enrichment} and {Geomorphology} {Alter} {Bottom}-{Up} {Control} on {Food} {Webs}},
	journal = {Ecosystems},
	volume = {22},
	number = {2},
	year = {2019},
	month = {mar},
	pages = {229{\textendash}242},
	issn = {1432-9840, 1435-0629},
	doi = {10.1007/s10021-018-0265-x},
	url = {http://link.springer.com/10.1007/s10021-018-0265-x},
	author = {Nelson, James A. and Johnson, David Samuel and Deegan, Linda A. and Spivak, Amanda C. and Sommer, Nathalie R.}
}
@article {PIE500,
	title = {The fiddler crab, Minuca pugnax, follows Bergmann{\textquoteright}s rule.},
	journal = {Ecology and Evolution},
	volume = {9},
	year = {2019},
	note = {PI Plum Data},
	pages = {14489-14497},
	keywords = {Bergmann{\textquoteright}s rule, fiddler crab, Gulf of Maine, LTER-PIE, population dynamics, salt marsh, temperature-size rule, tropicalization},
	doi = {10.1002/ece3.5883},
	author = {Johnson, D.S. and Crowley, C. and Longmire, K. and Nelson, J.A. and Williams, B. and Wittyngham, S.}
}
@article {johnson_fiddler_2019,
	title = {The fiddler crab, Minuca pugnax, follows Bergmann{\textquoteright}s rule},
	journal = {Ecology and Evolution},
	volume = {9},
	year = {2019},
	pages = {14489{\textendash}14497},
	abstract = {Bergmann{\textquoteright}s rule predicts that organisms at higher latitudes are larger than ones at lower latitudes. Here, we examine the body size pattern of the Atlantic marsh fiddler crab, Minuca pugnax (formerly Uca pugnax), from salt marshes on the east coast of the United States across 12 degrees of latitude. We found that M. pugnax followed Bergmann{\textquoteright}s rule and that, on average, crab carapace width increased by 0.5 mm per degree of latitude. Minuca pugnax body size also followed the temperature{\textendash}size rule with body size inversely related to mean water temperature. Because an organism{\textquoteright}s size influences its impact on an ecosystem, and M. pugnax is an ecosystem engineer that affects marsh functioning, the larger crabs at higher latitudes may have greater per-capita impacts on salt marshes than the smaller crabs at lower latitudes.},
	keywords = {Bergmann{\textquoteright}s rule, fiddler crab, Gulf of Maine, salt marsh, temperature{\textendash}size rule, tropicalization},
	issn = {2045-7758},
	doi = {10.1002/ece3.5883},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.5883},
	author = {Johnson, David Samuel and Crowley, Cynthia and Longmire, Katherine and Nelson, James and Williams, Bethany and Wittyngham, Serina}
}
@article {PIE472,
	title = {Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents},
	journal = {ISME},
	year = {2019},
	note = {PI},
	keywords = {flow path geometry, LTER-PIE, methanogens, microbial communities, population dynamics},
	doi = {10.1038/s41396-019-0382-3},
	author = {Stewart, L.C. and Algar, C.K. and Fortunato, C.S. and Larson, B.I. and Vallino, J.J. and Huber, J.A. and Butterfield, D.A. and Holden, J.F.}
}
@article {PIE448,
	title = {Feedbacks Between Nutrient Enrichment and Geomorphology Alter Bottom-Up Control on Food Webs},
	journal = {Ecosystems},
	year = {2018},
	note = {PI Plum Data},
	keywords = {estuary, food web theory, geomorphology, inorganic nutrients, landscape control, LTER-PIE, nutrient enrichment, population dynamics, saltmarsh, spatially coupled, trophic subsidy},
	doi = {10.1007/s10021-018-0265-x},
	author = {Nelson, J.A. and Johnson, D.S. and Deegan, L.A. and Spivak, A.C. and Sommer, N.R.}
}
@phdthesis {PIE456,
	title = {Factors that affect the composition and activity of salt marsh microbial communities: the effect of nutrient loading and diel cycles},
	volume = {PhD},
	year = {2017},
	note = {Grad},
	school = {Northeastern University},
	type = {phdthesis},
	address = {Boston, MA},
	keywords = {bacteria, dormancy, LTER-PIE, marsh pond, microbial activity, nutrient enrichment, population dynamics, rare biosphere, salt marsh},
	author = {Kearns, P.}
}
@inbook {PIE424,
	title = {From Headwaters to rivers to river networks: scaling in stream ecology},
	booktitle = {Streams In a Changing Environment},
	year = {2016},
	note = {PI Plum Data},
	pages = {349-388},
	publisher = {Academic Press},
	organization = {Academic Press},
	keywords = {connectivity, LTER-PIE, rivers, streams},
	doi = {10.1016/B978-0-12-405890-3.00008-7},
	author = {Wollheim, W.M.},
	editor = {Jones, J. and Stanley, E.}
}
@article {PIE412,
	title = {Functional responses of salt marsh microbial communities to long-term nutrient enrichment},
	journal = {Applied and Environmental Microbiology},
	volume = {82},
	year = {2016},
	note = {Grad},
	pages = {2862-2871},
	keywords = {inorganic nutrients, LTER-PIE, microbial communities, nutrient enrichment, population dynamics, salt marsh},
	doi = {10.1128/AEM.03990-15},
	author = {Graves, C.J. and Makrides, E. and Schmidt, V. and Giblin, A.E. and Cardon, Z.G. and Rand, D.M.}
}
@article {PIE383,
	title = {Flowering and biomass allocation in U.S. Atlantic coast <i>Spartina alterniflora</i>},
	journal = {American Journal of Botany},
	volume = {102},
	number = {5},
	year = {2015},
	note = {Grad},
	keywords = {biomass allocation, flowering, LTER-PIE, phenology, population dynamics, primary production, seed supply, Spartina alterniflora},
	doi = {10.3732/ajb.1400534},
	author = {Crosby, S.C. and Ivens-Duran, M. and Bertness, M.D. and Davey, E. and Deegan, L.A. and Leslie, H.M.}
}
@article {PIE417,
	title = {A framework for quantifying the magnitude and variability of community responses to global change drivers},
	journal = {Ecosphere},
	volume = {6},
	number = {12},
	year = {2015},
	note = {PI Synthesis},
	keywords = {beta diversity, community dissimilarity, convergence, divergence, LTER-PIE, multivariate analysis, non-metric multidimensional scaling, population dynamics, rank abundance curve, species composition},
	doi = {10.1890/ES15-00317.1},
	author = {Avolio, M.L and La Pierre, K.J. and Houseman, G.R. and Koerner, S.E. and Grman, E. and Isbell, F. and Johnson, D.S. and Wilcox, K.R.}
}
@article {PIE378,
	title = {Fiddler on the roof: a northern range extension for the marsh fiddler crab <i>Uca pugnax</i>},
	journal = {Journal of Crustacean Biology},
	volume = {34},
	number = {5},
	year = {2014},
	note = {PI Plum Data},
	pages = {671-673},
	keywords = {climate velocity, decapod, disturbance, LTER-PIE, marine invasion, population dynamics, Uca},
	doi = {10.1163/1937240X-00002268},
	author = {Johnson, D.S.}
}
@article {PIE355,
	title = {Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear.},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	year = {2013},
	note = {PI Plum Data},
	keywords = {biodiversity, conservation evaluation, ecological status, fish, LTER-PIE, population dynamics, river, stream},
	doi = {10.1002/aqc.2420},
	author = {Smith, J.M. and Wells, S.P. and Mather, M.E. and Muth, R.M.}
}
@article {PIE364,
	title = {Fluxes of water, sediments, and biogeochemical compounds in salt marshes},
	journal = {Ecological Processes},
	year = {2013},
	note = {PI Plum Data},
	keywords = {disturbance, estuarine fluxes, LTER-PIE, organic matter, salt marsh, tides},
	doi = {10.1186/2192-1709-2-3},
	author = {Fagherazzi, S. and Wiberg, P.L. and Temmerman, S. and Struyf, E. and Zhao, Y. and Raymond, P. A.}
}
@inbook {PIE326,
	title = {Future Suburban Development and the Environmental Implications of Lawns: A Case Study in New England, USA},
	booktitle = {Modeling of Land-use and Ecological Dynamics},
	series = {Cities and Nature},
	year = {2013},
	note = {PI Plum Data},
	pages = {119-141},
	publisher = {Springer},
	organization = {Springer},
	address = {New York, NY},
	keywords = {disturbance, geomod, lawns, LTER-PIE, Plum Island Ecosystem, primary production, suburbanization, water use},
	doi = {10.1007/978-3-642-40199-2_7},
	author = {Runfola, D.M. and Polsky, C. and Giner, N. and Pontius, R.G., Jr. and Nicolson, C.},
	editor = {Czamanski, D. and Benenson, I. and Malkinson, D.}
}
@thesis {PIE335,
	title = {Factors influencing stem density in creekbank Spartina alterniflora in a New England salt marsh},
	volume = {BA},
	year = {2012},
	note = {Undergrad},
	pages = {24},
	school = {Connecticut College},
	type = {bachelorsthesis},
	address = {New London, CT},
	keywords = {LTER-PIE, New England, primary production, salt marsh, Spartina alterniflora, stem density},
	author = {Chaisson, C.}
}
@phdthesis {PIE350,
	title = {Fundamental concepts of intensity analysis to understand changes among categories},
	volume = {Ph.D.},
	year = {2012},
	note = {Grad},
	pages = {131},
	school = {Clark University},
	type = {phdthesis},
	address = {Worcester, MA},
	keywords = {category analysis, disturbance, GIS, land use change, LTER-PIE},
	author = {Aldwaik, S.}
}
@article {PIE166,
	title = {Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient},
	journal = {Environmental Microbiology},
	volume = {9},
	year = {2007},
	note = {PI Plum Data},
	pages = {1439-1447},
	keywords = {ammonia, bacteria, disturbance, LTER-PIE, population dynamics, salinity gradient},
	doi = {10.1111/j.1462-2920.2007.01260.x},
	author = {Bernhard, A.E. and Tucker, J. and Giblin, A.E. and Stahl, D.A.}
}
@article {PIE142,
	title = {Fluvial filtering of land to ocean fluxes: from Holocene variations to Anthrocene.},
	journal = {Compte Rendus},
	volume = {337},
	year = {2005},
	note = {PI Coastal},
	pages = {107-123},
	keywords = {fluvial, inorganic nutrients, land to ocean flux, LTER-PIE, watershed},
	doi = {10.1016/j.crte.2004.09.016},
	author = {Meybeck, M. and Vorosmarty, C.J.}
}
@thesis {PIE127,
	title = {Factors affecting sedimentation patterns of a tidal marsh in Plum Island Sound Estuary, Massachusetts.},
	volume = {B.S.},
	year = {2004},
	note = {Undergrad},
	school = {College of William and Mary},
	type = {bachelorsthesis},
	keywords = {estuary, LTER-PIE, sedimentation patterns},
	author = {Lee, W. M.}
}
@article {PIE119,
	title = {Fine-scale phylogenetic architecture of a complex bacterial community.},
	journal = {Nature},
	volume = {430},
	year = {2004},
	note = {Collab Plum Data},
	pages = {551-554},
	keywords = {bacteria, diversity, LTER-PIE},
	doi = {10.1038/nature02649},
	author = {Acinas, S.G. and Klepac-Ceraj, K. and Hunt, D.E. and Pharino, C. and Ceraj, C. and Distel, D.L. and Polz, M.F.}
}
@article {PIE129,
	title = {Flow Cytometry-Assisted Cloning of Specific Sequence Motifs from Complex 16S rRNA Gene Libraries},
	journal = {Applied and Environmental Microbiology},
	volume = {70},
	year = {2004},
	note = {Collab Plum Data},
	pages = {7550-7554},
	keywords = {bacteria, flow cytometry, LTER-PIE},
	doi = {10.1128/AEM.70.12.7550-7554.2004},
	author = {Nielsen, J.L. and Schramm, A. and Bernhard, A.E. and van den EnghG.J. and Stahl, D.A.}
}
@inbook {PIE128,
	title = {Flow, sedimentation, and biomass production on a vegetated salt marsh in South Carolina: toward a predictive model of marsh morphologic and ecologic evolution.},
	booktitle = {The Ecogeomorphology of Tidal Marshes},
	year = {2004},
	note = {PI Coastal},
	pages = {165-187},
	publisher = {American Geophysical Union},
	organization = {American Geophysical Union},
	address = {Washington, D.C.},
	keywords = {LTER-PIE, marsh geomorphology, salt marsh biomass, sedimentation},
	author = {Mudd, S.M. and Fagherazzi, S. and Morris, J.T. and Furbish, D.J.},
	editor = {S. Fagherazzi and A. Marani and L.K. Blum}
}
@mastersthesis {PIE97,
	title = {Factors driving distribution of migratory striped bass across Massachusetts estuaries: predator-prey interactions and implications for multispecies management.},
	volume = {M.S.},
	year = {2003},
	note = {Grad},
	school = {University of Massachusetts},
	type = {mastersthesis},
	keywords = {estuary, LTER-PIE, predator, prey, striped bass},
	author = {Ferry, K.}
}
@thesis {PIE58,
	title = {The feeding ecology of mummichog and Atlantic silversides in the Rowley River.},
	volume = {B.S.},
	year = {2001},
	note = {Undergrad},
	school = {Conneticut College},
	type = {bachelorsthesis},
	keywords = {food web, LTER-PIE, mummichog, silverside},
	author = {Haines, J.}
}
