@inbook {fagherazzi_ecogeomorphology_2022,
title = {Ecogeomorphology of Salt Marshes},
booktitle = {Treatise on Geomorphology (Second Edition)},
year = {2022},
pages = {445 {\textendash} 462},
publisher = {Academic Press},
organization = {Academic Press},
keywords = {Belowground biomass Ecogeomorphology Halophyte vegetation Nutrient enrichment Root scalping Salt marsh Sea level rise Tidal channels Tides and wind waves},
doi = {10.1016/B978-0-12-818234-5.00194-2},
url = {https://www.sciencedirect.com/science/article/pii/B9780128182345001942?via\%3Dihub},
author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T. J. and Deegan, L.A. and Johnson, D.S. and Lesser, J.S. and Nelson, J.A.},
editor = {Shroder, J.F.}
}
@inbook {testa_estuarine_2022,
title = {Estuarine Ecosystem Metabolism},
booktitle = {Estuarine Ecology, 3rd. Edition},
year = {2022},
publisher = {Wiley},
organization = {Wiley},
edition = {3},
abstract = {Estuarine Ecology A detailed and accessible exploration of the fundamentals and the latest advances in estuarine ecology In the newly revised third edition of Estuarine Ecology, a team of distinguished ecologists presents the current knowledge in estuarine ecology with particular emphasis on recent trends and advances. The book is accessible to undergraduate students while also providing a welcome summary of up-to-date content for a more advanced readership. This latest edition is optimized for classroom use, with a more intuitive mode of presentation that takes into account feedback from the previous edition{\textquoteright}s readers. Review questions and exercises have been added to assist in the learning and retention of complex concepts. Estuarine Ecology remains the gold standard for the discipline by taking stock of the manifold scientific breakthroughs made in the field since the last edition was written. It also offers: Thorough introductions to estuarine geomorphology, circulation, and chemistry In-depth treatments of estuarine primary and secondary production, including coastal marshes and mangrove wetlands A holistic view of estuarine ecosystems, their modeling and analysis, as well as the impact of human activities and climate change A companion website with detailed answers to exercise questions Perfect for students of estuarine ecology, environmental science, fisheries science, oceanography, and natural resource management, Estuarine Ecology will also earn a place in the libraries of professionals, government employees, and consultants working on estuary and wetlands management and conservation.},
isbn = {978-1-119-53465-5},
url = {https://www.wiley.com/en-us/Estuarine+Ecology\%2C+3rd+Edition-p-9781119534655},
author = {Testa, Jeremy M. and Hopkinson, Charles S. and StÓ•hr, Peter A. and Weston, Nathaniel}
}
@article {evenden_encoding_2021,
title = {Encoding a {Categorical} {Independent} {Variable} for {Input} to {TerrSet}{\textquoteright}s {Multi}-{Layer} {Perceptron}},
journal = {ISPRS International Journal of Geo-Information},
volume = {10},
number = {10},
year = {2021},
month = {oct},
pages = {686},
abstract = {The profession debates how to encode a categorical variable for input to machine learning algorithms, such as neural networks. A conventional approach is to convert a categorical variable into a collection of binary variables, which causes a burdensome number of correlated variables. TerrSet{\textquoteright}s Land Change Modeler proposes encoding a categorical variable onto the continuous closed interval from 0 to 1 based on each category{\textquoteright}s Population Evidence Likelihood (PEL) for input to the Multi-Layer Perceptron, which is a type of neural network. We designed examples to test the wisdom of these encodings. The results show that encoding a categorical variable based on each category{\textquoteright}s Sample Empirical Probability (SEP) produces results similar to binary encoding and superior to PEL encoding. The Multi-Layer Perceptron{\textquoteright}s sigmoidal smoothing function can cause PEL encoding to produce nonsensical results, while SEP encoding produces straightforward results. We reveal the encoding methods by illustrating how a dependent variable gains across an independent variable that has four categories. The results show that PEL can differ substantially from SEP in ways that have important implications for practical extrapolations. If users must encode a categorical variable for input to a neural network, then we recommend SEP encoding, because SEP efficiently produces outputs that make sense.},
issn = {2220-9964},
doi = {10.3390/ijgi10100686},
url = {https://www.mdpi.com/2220-9964/10/10/686},
author = {Evenden, Emily and Pontius Jr, Robert Gilmore}
}
@article {liu_efficient_2020,
title = {Efficient tidal channel networks alleviate the drought-induced die-off of salt marshes: {Implications} for coastal restoration and management},
journal = {Science of The Total Environment},
volume = {749},
year = {2020},
pages = {141493},
issn = {00489697},
doi = {10.1016/j.scitotenv.2020.141493},
url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720350221},
author = {Liu, Zezheng and Fagherazzi, Sergio and She, Xiaojun and Ma, Xu and Xie, Chengjie and Cui, Baoshan}
}
@article {xie_enhanced_2020,
title = {Enhanced {Intensity} {Analysis} to {Quantify} {Categorical} {Change} and to {Identify} {Suspicious} {Land} {Transitions}: {A} {Case} {Study} of {Nanchang}, {China}},
journal = {Remote Sensing},
volume = {12},
number = {20},
year = {2020},
pages = {3323},
abstract = {Conventional methods to analyze a transition matrix do not offer in-depth signals concerning land changes. The land change community needs an effective approach to visualize both the size and intensity of land transitions while considering possible map errors. We propose a framework that integrates error analysis, intensity analysis, and difference components, and then uses the framework to analyze land change in Nanchang, the capital city of Jiangxi province, China. We used remotely sensed data for six categories at four time points: 1989, 2000, 2008, and 2016. We had a confusion matrix for only 2016, which estimated that the map of 2016 had a 12\% error, while the temporal difference during 2008{\textendash}2016 was 22\% of the spatial extent. Our tools revealed suspected errors at other years by analyzing the patterns of temporal difference. For example, the largest component of temporal difference was exchange, which could indicate map errors. Our framework identified categories that gained during one time interval then lost during the subsequent time interval, which raised the suspicion of map error. This proposed framework facilitated visualization of the size and intensity of land transitions while illustrating possible map errors that the profession routinely ignores.},
issn = {2072-4292},
doi = {10.3390/rs12203323},
url = {https://www.mdpi.com/2072-4292/12/20/3323},
author = {Xie, Zheyu and Pontius Jr, Robert Gilmore and Huang, Jinliang and Nitivattananon, Vilas}
}
@article {PIE485,
title = {Estimating Aboveground Biomass and Its Spatial Distribution in Coastal Wetlands Utilizing Planet Multispectral Imagery},
journal = {Remote Sensing},
volume = {11},
year = {2019},
note = {Grad},
keywords = {biomass, LTER-PIE, planet satellites, population dynamics, primary production, salt marsh, Spartina alterniflora, vegetation index},
doi = {10.3390/rs11172020},
author = {Miller, G.J. and Morris, J.T. and Wang, C.}
}
@phdthesis {PIE455,
title = {Ecosystem metabolism in salt marsh tidal creeks and ponds: Applying triple oxygen isotopes and other gas tracers to novel environments},
volume = {PhD},
year = {2017},
note = {Grad},
school = {Woods Hole Oceanographic Institution/ MIT Joint Program},
type = {phdthesis},
address = {Cambridge, MA},
keywords = {LTER-PIE, organic matter, oxygen, primary production, salt marsh, salt marsh ponds, stable isotopes, tidal creeks},
author = {Howard, E.}
}
@article {PIE435,
title = {The effect of evaporation on the erodibility of mudflats in a mesotidal estuary},
journal = {Estuarine, Coastal and Shelf Science},
volume = {194},
year = {2017},
note = {PI Plum Data},
pages = {118-127},
keywords = {disturbance, erosion, estuaries, LTER-PIE, mudflats, tidal energy},
doi = {10.1016/j.ecss.2017.06.011},
author = {Fagherazzi, S. and Viggato, T. and Vieillard, A.M. and Mariotti, G. and Fulweiler, R.W.}
}
@article {PIE443,
title = {Effect of short-term, diel changes in environmental conditions on active microbial communities in a salt marsh pond},
journal = {Aquatc Microbial Ecology},
volume = {80},
year = {2017},
note = {Grad},
pages = {29-41},
keywords = {disturbance, dormancy, LTER-PIE, marsh pond, microbial activity, population dynamics, rare biosphere, salt marsh},
doi = {10.3354/ame01837},
author = {Kearns,P.J. and Holloway, D. and Angell, J.H. and Feinman, S.G. and Bowen, J.L.}
}
@article {PIE396,
title = {Ecosystem service preferences and priorities for residential landscapes: Homogeneity and heterogeneity across diverse cities. },
journal = {Urban Ecosystems},
year = {2015},
note = {PI Plum Data},
keywords = {ecosystem services, human values, land management, lawns, LTER-PIE, residential landscapes, urban sustainability},
doi = {10.1007/s11252-015-0477},
author = {Larson, K.L. and Nelson, K.C. and Samples, S.R. and Hall, S.J. and Bettez, N.D. and Cavender-Bares, J. and Groffman, P.M. and Grove, M. and Heffernan, J.B. and Hobbie, S. and Learned, J. and Morse, J.L. and Neill, C. and Ogden,L.A. and O{\textquoteright}Neil-Dunne, J. and Pataki, D.E. and Polsky, C. and Chowdhury, R.R. and Steele, M. and Trammell, T.L.E.}
}
@article {PIE401,
title = {Ecosystem{\textquoteright}s 80th and the Reemergence of Emergence},
journal = {Ecosystems},
volume = {18},
number = {5},
year = {2015},
note = {PI Synthesis},
pages = {735-739},
keywords = {ecosystem, emergence, LTER-PIE},
doi = {10.1007/s10021-015-9893-6},
author = {Rastetter, E. and Vallino, J.}
}
@article {PIE347,
title = {Ecological Homogenization of Urban America},
journal = {Frontiers in Ecology and Environment},
year = {2014},
note = {PI Synthesis},
pages = {74-81},
keywords = {LTER-PIE, plant communities, population dynamics, urbanization},
doi = {10.1890/120374},
author = {Groffman, P.M. and Cavender-Bares, J. and Bettez, N.D. and Grove, J.M. and Hall, S.J. and Heffernan, J.B. and Hobbie. S.E. and Larson, K.L. and Morse, J.L. and Neill, C. and Nelson, K. and O{\textquoteright}Neill-Dunne, J. and Ogden, L. and Pataki, D.E. and Polsky, C. and Chowdhury, R.R. and Steele, M.K.}
}
@mastersthesis {PIE370,
title = {The effects of nitrate fertilization on the photosynthetic performance of the salt marsh cordgrass, Spartina alterniflora},
volume = {M.S.},
year = {2014},
note = {Grad},
school = {Clark University},
type = {mastersthesis},
keywords = {disturbance, LTER-PIE, nitrogen fertilization, primary production, salt marsh},
author = {Sullivan, H.L.}
}
@inbook {PIE300,
title = {Ecogeomorphology of Salt Marshes},
booktitle = {Treatise on Geomorphology},
volume = {12},
year = {2013},
note = {PI Plum Data},
pages = {180-200},
publisher = {Elsevier},
organization = {Elsevier},
keywords = {disturbance, geomorphology, LTER-PIE, nutrients, salt marsh},
author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T.J. and Deegan, L.A. and Johnson, D.S.},
editor = {Shroder, J. and Butler, D. and Hubb, C.}
}
@inbook {PIE301,
title = {Ecogeomorphology of Tidal Flats},
booktitle = {Treatise on Geomorphology},
volume = {12},
year = {2013},
note = {PI Plum Data},
pages = {201-220},
publisher = {Elsevier},
organization = {Elsevier},
keywords = {disturbance, estuary, geomorphology, LTER-PIE, tidal flats},
author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T.J. and Deegan, L.A. and Johnson, D.S.},
editor = {Shroder, J. and Butler, D. and Hubb, C.}
}
@article {PIE341,
title = { Ecosystem metabolism and nutrient uptake in an urban, piped headwater stream},
journal = {Biogeochemistry},
year = {2013},
note = {PI Plum Data},
keywords = {inorganic nutrients, LTER-PIE, metabolism, organic matter, stream, urban},
doi = {10.1007/s10533-013-9900-y},
author = {Hope, A.J. and McDowell, W.H. and Wollheim, W.M.}
}
@book {PIE373,
title = {An Ecosystem Services Approach to Assessing the Impacts of the Deepwater Horizon Oil Spill in the Gulf of Mexico},
year = {2013},
note = {PI Synthesis},
pages = {246},
publisher = {National Academies Press},
organization = {National Academies Press},
address = {Washington, D.C.},
keywords = {disturbance, ecosystem services, LTER-PIE, resilience, restoration, wetlands},
author = {Mayer, L.A. and Boufadel, M.C. and Brenner, J. and Carney, R.S. and Cooper, C.K. and Deming, J.W. and Die, D.J. and Eagle, J. and Geraci, J.R. and Knuth, B.A. and Lee, K. and Morris, J.T. and Polasky, S. and Rabalais, N.N. and Stahl Jr., R.G. and Yoskowitz, D. and Waddell, K.},
editor = {National Research Council of the National Academies}
}
@thesis {PIE330,
title = {Effect of eutrophication on benthic microalgae},
volume = {BS},
year = {2013},
note = {Undergrad},
school = {Middlebury College},
type = {bachelorsthesis},
address = {Middlebury, VT},
keywords = {fertilizer, inorganic nutrients, LTER-PIE, microalgae, primary production},
author = {Ritter, A.}
}
@thesis {PIE400,
title = {The Effect of Physical and Biological Processes on the erosion of Cohesive Sediments},
volume = {B.S.},
year = {2013},
note = {Undergrad},
school = {Boston University},
type = {bachelorsthesis},
address = {Boston, MA},
keywords = {disturbance, erosion, LTER-PIE, salt marsh, sediments},
author = {Valentine, K.}
}
@mastersthesis {PIE371,
title = {The effects of nitrate fertilization on the physiology of a common salt marsh cordgrass species, Spartina alterniflora},
volume = {M.S.},
year = {2013},
note = {Grad},
school = {Clark University},
type = {mastersthesis},
keywords = {disturbance, LTER-PIE, nitrogen fertilization, plant physiology, salt marsh},
author = {Freidman, K.}
}
@thesis {PIE339,
title = {The effects of urbanization on the aboveground carbon storage and tree species composition in the Boston Metropolitan Region},
volume = {BS},
year = {2013},
note = {Undergrad},
pages = {45},
school = {Brown University},
type = {bachelorsthesis},
address = {Providence, RI},
keywords = {LTER-PIE, population dynamics, primary production, residential yards, tree biomass, tree species, urbanization},
author = {Ward, E.}
}
@article {PIE332,
title = {The ephemeral life of a salt marsh},
journal = {Geology},
volume = {41},
year = {2013},
note = {PI Synthesis},
pages = {943-944},
keywords = {accretion, disturbance, erosion, LTER-PIE, primary production, salt marsh},
doi = {10.1130/focus082013.1},
author = {Fagherazzi, S.}
}
@article {PIE283,
title = {The ebb and flood of silica: Quantifying dissolved and biogenic silica fluxes from a temperate salt marsh},
journal = {Estuarine, Coastal and Shelf Science},
volume = {95},
year = {2011},
note = {Collab Plum Data},
pages = {415-423},
keywords = {biogenic silica, diatoms, dissolved silica, inorganic nutrients, LTER-PIE, nutrient cycles, primary production, salt marshes},
doi = {10.1016/j.ecss.2011.10.012},
author = {Vieillard, A., and R.W. Fulweiler, R.W. and Hughes, Z. and Carey, J.}
}
@inbook {PIE344,
title = {Ecosystem Metabolism},
booktitle = {Estuarine Ecology},
volume = {2},
year = {2011},
note = {PI Synthesis},
pages = {381 - 416},
publisher = {John Wiley and Sons, Inc.},
organization = {John Wiley and Sons, Inc.},
chapter = {15},
address = {Hoboken, NJ},
keywords = {ecosystem metabolism, estuaries, LTER-PIE, organic matter, oxygen, carbon dioxide, primary production},
doi = {10.1002/9781118412787.ch15},
author = {Testa, J.M. and Kemp, W.M. and Hopkinson, C.S. and Smith, S.V.},
editor = {Day, J.W. and Crump, B.C. and Kemp, W.M. and Yanez-Arancibia, A.}
}
@article {PIE227,
title = {Ecosystem biogeochemistry considered as a distributed metabolic network ordered by maximum entropy production.},
journal = {Philosophical Transactions of The Royal Society B},
volume = {365},
year = {2010},
note = {PI Plum Data},
pages = {1417-1427},
keywords = {disturbance, entropy, inorganic nutrients, LTER-PIE, metabolism, organic matter, population dynamics},
doi = {10.1098/rstb.2009.0272},
author = {Vallino, J.J.}
}
@article {PIE223,
title = {The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments},
journal = {Limnology and Oceanography},
volume = {55},
year = {2010},
note = {Grad},
pages = {789-802},
keywords = {denitrification, DNRA, inorganic nutrients, LTER-PIE, nitrogen, salt marsh},
doi = {10.4319/lo.2010.55.2.0789},
author = {Koop-Jakobsen, K. and Giblin, A.E.}
}
@article {PIE246,
title = {The effects of salinity on nitrogen losses from an oligohaline estuarine sediment},
journal = {Estuaries and Coasts},
volume = {33},
year = {2010},
note = {PI Plum Data},
pages = {1054-1068},
keywords = {ammonium, benthic fluxes, benthic respiration, denitrification, disturbance, DNRA, estuaries, inorganic nutrients, LTER-PIE, sediments},
doi = {10.1007/s12237-010-9280-7},
author = {Giblin, A.E. and Weston, N.B. and Banta, G.T. and Tucker, J. and Hopkinson, C.S.}
}
@article {PIE245,
title = {The effects of varying salinity on ammonium exchange in estuarine sediments of the Parker River, Massachusetts.},
journal = {Estuaries and Coasts},
volume = {33},
year = {2010},
note = {PI Plum Data},
pages = {985-1003},
keywords = {adsorption, ammonium exchange, disturbance, estuaries, inorganic nutrients, LTER-PIE, Parker River estuary, salinity, sediments},
doi = {10.1007/s12237-010-9282-5},
author = {Weston, N.B. and Giblin, A.E. and Banta, G. and Hopkinson, C.S. and Tucker, J.}
}
@article {PIE225,
title = {Effective denitrification scales predictably with water residence time across diverse systems},
journal = {Nature Precedings},
year = {2009},
note = {PI Plum Data},
keywords = {denitrification, disturbance, estuary, ground water, inorganic nutrients, lake, LTER-PIE, nitrogen, residence, river, soil, stream, time scaling, water, wetland},
doi = {10101/npre.2009.3520.1},
author = {Green, M. and Wollheim, W.M. and Basu, N. and Gettel, G.M. and Rao, P. and Morse, N. and Stewart, R.}
}
@article {PIE185,
title = {Effects of regular salt marsh haying on marsh plants, algae, invertebrates and birds at Plum Island Sound, Massachusetts},
journal = {Wetlands Ecology and Management},
volume = {17},
year = {2009},
note = {PI Plum Data},
pages = {469-487},
keywords = {coastal wetlands, disturbance, haying, LTER-PIE, Orchestia, organic matter, primary production, salt marsh, shorebirds, Spartina, stable isotopes},
doi = {10.1007/s11273-008-9125-3},
author = {Buchsbaum, R.N. and Deegan, L.A. and Horowitz, J. and Garritt, R.H. and Ludlam, J.P. and Shull, D. H.}
}
@article {PIE337,
title = {Effects of warming and altered precipitation on plant and nutrient dynamics of a New England salt marsh},
journal = {Ecological Applications},
volume = {19},
number = {7},
year = {2009},
note = {Grad},
pages = {1758 - 1773},
keywords = {altered precipitation, climate change, decomposition, Distichlis spicata, disturbance, ecosystem services, LTER-PIE, nutrient cycling, open-topped chamber, primary production, salt marsh, Spartina alterniflora, Spartina patens},
doi = {10.1890/08-0172.1},
author = {Charles, H. and Dukes, J.S.}
}
@article {PIE218,
title = {Evaluation of a gastric radio tag insertion technique for anadromous river herring.},
journal = {North American Journal of Fisheries Management},
volume = {29},
year = {2009},
note = {Grad},
pages = {367-377},
keywords = {American shad, behavior, confinement, fish, fresh-water, LTER-PIE, migration, physiology, population dynamics, salmon smolts, stress-response, tracking},
doi = {10.1577/M08-111.1},
author = {Smith, J.S. and Mather, M.E. and Frank, H.J. and Muth, R.M. and Finn, J.T. and McCormick, S.D.}
}
@mastersthesis {PIE192,
title = {Evaluation of pre-spawning movements of anadromous alewives in the Ipswich River using radiotelemetry},
volume = {M.S.},
year = {2009},
note = {Grad},
school = {University of Massachusetts},
type = {mastersthesis},
address = {Amherst, MA},
keywords = {disturbance, LTER-PIE, population dynamics, restoration, river herring},
author = {Frank, H.}
}
@article {PIE188,
title = {Examining mummichog growth and movement: Are some individuals making intra-season migrations to optimize growth?},
journal = {Journal of Experimental Marine Biology and Ecology},
volume = {369},
year = {2009},
note = {PD Plum Data},
pages = {8-16},
keywords = {animal movement, estuary, Fundulus heteroclitus, LTER-PIE, mummichogs, population dynamics, stable isotopes},
doi = {10.1016/j.jembe.2008.09.027},
author = {Haas, H.L. and Freeman, C.J. and Logan, J.M. and Deegan, L and Gaines, E.F.}
}
@proceedings {PIE139,
title = {Estimating the land transition matrix based on erroneous maps},
journal = {Conference proceedings of Studying, Modeling and Sense Making of Planet Earth},
year = {2008},
note = {PI Plum Data},
pages = {8},
address = {Mytilene, Greece },
keywords = {disturbance, GIS, land use change, LTER-PIE},
author = {Pontius, R.G., Jr. and Li, X.}
}
@article {PIE161,
title = {Ecological engineering in intertidal saltmarshes.},
journal = {Hydrobiologia},
volume = {577},
year = {2007},
note = {PI Plum Data},
pages = {161-168},
keywords = {ecological engineering, LTER-PIE, organic matter, saltmarsh, sea level, sediment, Spartina},
doi = {10.1007/s10750-006-0425-4},
author = {Morris, J. T.}
}
@mastersthesis {PIE194,
title = {Effects of Warming and Altered Precipitation on Plant and Nutrient Dynamics of a New England Salt Marsh},
volume = {M.S.},
year = {2007},
note = {Grad},
pages = {82},
school = {University of Massachusetts},
type = {mastersthesis},
address = {Boston, MA},
keywords = {climate change, disturbance, inorganic nutrients, LTER-PIE, organic matter, primary production, salt marsh},
author = {Charles, H.}
}
@article {PIE230,
title = {Environmental turbulent mixing controls on air-water gas exchange in marine and aquatic systems},
journal = {Geophysical Research Letters},
volume = {34},
year = {2007},
note = {PD Plum Data},
keywords = {diffusion, estuaries, gas transfer, LTER-PIE, oxygen, carbon dioxide, rivers},
doi = {10.1029/2006GL028790},
author = {Zappa, C.J. and McGillis, W.R. and Raymond, P.A. and Edson, J.B. and Hintsa, E.J. and Zemmelink, H.J. and Dacey, J.W.H. and Ho, D.T.}
}
@inbook {PIE196,
title = {Estimating net primary production of salt marsh macrophytes},
booktitle = {Principles and Standards for Measuring Primary Production},
year = {2007},
note = {PI Synthesis},
pages = {106-119},
publisher = {Oxford University Press},
organization = {Oxford University Press},
keywords = {allometry, harvest, intertidal zone, LTER-PIE, primary production, salt marsh, stem turnover},
doi = {10.1093/acprof:oso/9780195168662.003.0007},
author = {Morris, J.T.},
editor = {Fahey, T.J. and Knapp, A.K.}
}
@article {PIE232,
title = {Effect of historical changes in land use and climate on the water budget of an urbanizing watershed},
journal = {Water Resources Research},
volume = {42},
year = {2006},
note = {PI Plum Data},
keywords = {climate change, disturbance, hydrology, land use, LTER-PIE, population dynamics, watershed},
doi = {10.1029/2005WR004131},
author = {Claessens, L. and Hopkinson, C. and Rastetter, E. and Vallino, J.}
}
@conference {PIE186,
title = {Expanding the conceptual, mathematical, and practical methods for map comparison},
booktitle = {Conference proceedings of the meeting of Spatial Accuracy 2006},
year = {2006},
note = {PI Plum Data},
pages = {16},
address = {Lisbon, Portugal},
keywords = {disturbance, GIS, LTER-PIE},
author = {Pontius, R.G., Jr. and Connors, J.}
}
@mastersthesis {PIE243,
title = {Experimental nutrient enrichment of a New England salt marsh: plant productivity and community composition responses},
volume = {M.S.},
year = {2006},
note = {Grad},
school = {Connecticut College},
type = {mastersthesis},
address = {New London, CT},
keywords = {inorganic nutrients, LTER-PIE, nutrient enrichment, population dynamics, primary production},
author = {Miller, E.E.}
}
@inbook {PIE140,
title = {The effect of habitat loss and degradation on fisheries.},
booktitle = {The Decline of Fisheries Resources in New England: Evaluating the Impact of Overfishing, Contamination, and Habitat Degradation},
series = {MIT Sea Grant College Program},
volume = {MITSG 05-5},
year = {2005},
note = {PI Coastal},
pages = {67-96},
publisher = {University of Massachusetts Press},
organization = {University of Massachusetts Press},
keywords = {fisheries, habitat, LTER-PIE, population dynamics},
author = {Deegan, L.A. and Buchsbaum, R.},
editor = {R. Buchsbaum and J. Pederson and W. E. Robinson}
}
@proceedings {PIE151,
title = {Effects of changes in sea level and productivity on the stability of intertidal marshes.},
journal = {UNESCO Proceeding Series on Lagoons and Coastal Wetlands in the Global Change Context: Impact and Management Issues},
year = {2005},
note = {PI Plum Data},
month = {April 26-28, 2004},
pages = {121-127},
address = {Venice},
keywords = {LTER-PIE, productivity, salt marsh, sea level, wetlands},
author = {Morris, J.T.},
editor = {Lasserre, P. and Viaroli, P. and Campostrini P.}
}
@thesis {PIE144,
title = {The effects of nutrient enrichment and predator removal on algal communities in a New England Marsh.},
volume = {B.S.},
year = {2005},
note = {Undergrad},
school = {Middlebury College},
type = {bachelorsthesis},
address = {Middlebury, VT},
keywords = {algae, estuary, LTER-PIE, nutrient enrichment, salt marsh},
author = {Randall, J.}
}
@article {PIE141,
title = {Efficient export of carbon to the deep ocean through dissolved organic matter.},
journal = {Nature},
volume = {433},
year = {2005},
note = {PI Coastal},
pages = {142-145},
keywords = {carbon, dissolved organic matter, marine, LTER-PIE},
doi = {10.1038/nature03191},
author = {Hopkinson, C.S. and Vallino, J.}
}
@article {PIE154,
title = {Estimating estuarine gross production, community respiration and net ecosystem production: A nonlinear inverse technique.},
journal = {Ecological Modeling},
volume = {187},
year = {2005},
note = {PI Plum Data},
pages = {281-296},
keywords = {community respiration, dissolved oxygen, estuarine metabolism, gross primary production, inverse modeling, LTER, LTER-PIE, primary production},
doi = {10.1016/j.ecolmodel.2004.10.018},
author = {Vallino, J. and Hopkinson, C.S. and Garritt, R.H.}
}
@article {PIE125,
title = {Effect of nutrient enrichment and salinity on salt marsh invertebrates in the Plum Island Estuary.},
journal = {Biological Bulletin},
volume = {207},
year = {2004},
note = {REU},
pages = {174},
keywords = {LTER-PIE, nutrient enrichment, salinity, salt marsh invertebrates},
doi = {10.1086/BBLv207n2p174},
author = {Kerry, J. and Boorse, D. and Buchsbaum, R.}
}
@proceedings {PIE136,
title = {The effects of long term nutrient addition on a salt marsh community.},
journal = {New England Estuarine Research Society (NEERS), March 7-9, 2004},
year = {2004},
note = {PI Plum Data},
address = {Burlington, Vermont},
keywords = {community, LTER-PIE, nitrogen, outfall, salt marsh},
author = {Sheldon, S.P. and Twichell, S. and Deegan, L.A.}
}
@inbook {PIE124,
title = {Estuarine respiration: an overview of benthic, pelagic, and whole system respiration },
booktitle = {Respiration in Aquatic Ecosystems},
year = {2004},
note = {PI Synthesis},
pages = {122-146},
publisher = {Academic Press},
organization = {Academic Press},
address = {New York, NY},
keywords = {benthic respiration, estuaries, LTER-PIE, organic matter, pelagic respiration, respiration rate, whole system respiration},
isbn = { 9780198527084},
doi = {10.1093/acprof:oso/9780198527084.003.0008},
author = {Hopkinson, C. and Smith, E.},
editor = {delGiorgio, P.A. and Williams, P.J.leB.}
}
@article {PIE106,
title = {Ecological Variability in Space and Time: Insights Gained from the US LTER Program },
journal = {BioSciences},
volume = {53},
number = {Special LTER Issue},
year = {2003},
note = {PI Synthesis},
pages = {57-67},
keywords = {long-term regional ecology, LTER-PIE, spatial variability, temporal variability},
doi = {10.1641/0006-3568(2003)053[0057:EVISAT]2.0.CO;2},
author = {Kratz, T.K. and Deegan, L.A. and Harmon, M.E. and Lauenroth, W.K.}
}
@article {PIE110,
title = {Ecosystem modulation of dissolved carbon age in a temperate marsh dominated estuary.},
journal = {Ecosystems},
volume = {6},
year = {2003},
note = {PI/PD Plum Data},
pages = {694-705},
keywords = {carbon, estuary, LTER-PIE, marsh},
doi = {10.1007/s10021-002-0213-6},
author = {Raymond, P. A. and Hopkinson, C.S.}
}
@thesis {PIE114,
title = {The effects of long term nutrient addition on a salt marsh community},
volume = {B.S.},
year = {2003},
note = {Undergrad},
school = {Middleburry College},
type = {bachelorsthesis},
address = {Middlebury, VT},
keywords = {invertebrates, LTER-PIE, nitrogen, outfall, salt marsh},
author = {Twitchell, S.}
}
@article {PIE109,
title = {Estimating the uncertainty of land-cover extrapolations while constructing a raster map from tabular data.},
journal = {Journal of Gegraphical Systems},
volume = {5},
number = {3},
year = {2003},
note = {PI Synthesis},
pages = {253-273},
keywords = {GIS, land use, LTER-PIE, model validation},
doi = {10.1007/s10109-003-0109-9},
author = {Pontius, R.G., Jr. and Agrawal, A. and Huffaker, D.}
}
@article {PIE84,
title = {Effects of haying on salt marsh surface invertebrates},
journal = {Biological Bulletin},
volume = {203},
year = {2002},
note = {REU},
pages = {250-251},
keywords = {invertebrates, LTER-PIE, salt marsh hay},
doi = {10.2307/1543424},
author = {Ludlam, J.P. and Shull, D.H. and Buchsbaum, R.}
}
@inbook {PIE76,
title = {Effects of trawling and dredging on seafloor habitat.},
booktitle = {Committee on Ecosystem Effects of Fishing
},
year = {2002},
note = {PI Coastal},
pages = {107 pp.},
publisher = {National Academy Press},
organization = {National Academy Press},
address = {Washington, DC},
keywords = {fisheries, habitat, LTER-PIE},
author = {Deegan, L.A.}
}
@article {PIE71,
title = {The effects of salt marsh haying on benthic algal biomass},
journal = {Biological Bulletin},
volume = {201},
year = {2001},
note = {REU},
pages = {287-288},
keywords = {algae, benthic, hay, LTER-PIE, salt marsh},
doi = {10.2307/1543370},
author = {Williams, L. and Noblitt IV, G.C. and Buchsbaum, R.}
}
@inbook {PIE42,
title = {Ecophysiological controls on the growth of Spartina alterniflora},
booktitle = {Concepts and Controversies in Tidal Marsh Ecology},
year = {2000},
note = {PI Synthesis},
pages = {59-80},
publisher = {Kluwer Academic Publishers},
organization = {Kluwer Academic Publishers},
address = {Dordredt, the Netherlands.},
keywords = {LTER-PIE, salt marsh, Spartina},
author = {Mendelssohn, I. A. and Morris, J.T.},
editor = {M. P. Weinstein and D. A. Kreeger}
}
@inbook {PIE44,
title = {Effects of sea level anomalies on estuarine processes.},
booktitle = {Estuarine Science: A Synthetic Approach to Research and Practice},
year = {2000},
note = {PI Synthesis},
pages = {107-127},
publisher = {Island Press},
organization = {Island Press},
address = {Washington, DC},
keywords = {LTER-PIE, salt marsh, sea level, sediment accretion},
author = {Morris, J. T.},
editor = {J. Hobbie}
}
@book {PIE32,
title = {Estuarine Science: A Synthetic Approach to Research and Practice},
year = {2000},
note = {PI Synthesis},
pages = {539},
publisher = {Island Press},
organization = {Island Press},
address = {Washington, DC},
keywords = {estuarine ecology, estuarine oceanography, LTER-PIE},
author = {Hobbie, J.}
}
@inbook {PIE33,
title = {Estuarine Science: The key to progress in coastal ecological research},
booktitle = {Estuarine Science: A Synthetic Approach to Research and Practice},
year = {2000},
note = {PI Synthesis},
pages = {1-16},
publisher = {Island Press},
organization = {Island Press},
address = {Washington, DC},
keywords = {estuarine ecology, estuarine oceanography, LTER-PIE},
author = {Hobbie, J. E.},
editor = {J. Hobbie}
}
@techreport {PIE14,
title = {Establishing the Food Web Links between Estuaries and Nearshore Fisheries of New England},
year = {1999},
note = {PI Plum Data},
pages = {26},
institution = {NOAA},
keywords = {estuary, fisheries, food web, LTER-PIE},
isbn = {Final Report NA 76 FD 0106},
author = {Deegan, L. and Wright, L.A. and Hughes, J. and Boynton, E.}
}
@article {PIE9,
title = {Estimation of dispersion and characteristic mixing times in Plum Island Sound Estuary},
journal = {Estuarine, Coastal and Shelf Science},
volume = {46},
year = {1998},
note = {PI Plum Data},
pages = {333-350},
keywords = {average age, average esidence time, average transit time, dispersion, estuary, LTER-PIE, Massachusetts coast, tidal prism},
doi = {10.1006/ecss.1997.0281},
author = {Vallino, J. J. and Hopkinson, C.S.}
}