@article {8842,
	title = {A fiddler crab reduces plant growth in its expanded range},
	journal = {Ecology},
	volume = {104310},
	year = {2023},
	month = {Dec-12-2023},
	issn = {0012-9658},
	doi = {10.1002/ecy.4203},
	url = {https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4203},
	author = {Mart{\'\i}nez-Soto, Kayla S. and Johnson, David S.}
}
@article {rand_parasite_2023,
	title = {Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system},
	journal = {Molecular Ecology},
	volume = {32},
	year = {2023},
	pages = {5028{\textendash}5041},
	abstract = {Manipulation of host phenotypes by parasites is hypothesized to be an adaptive strategy enhancing parasite transmission across hosts and generations. Characterizing the molecular mechanisms of manipulation is important to advance our understanding of host{\textendash}parasite coevolution. The trematode (Levinseniella byrdi) is known to alter the colour and behaviour of its amphipod host (Orchestia grillus) presumably increasing predation of amphipods which enhances trematode transmission through its life cycle. We sampled 24 infected and 24 uninfected amphipods from a salt marsh in Massachusetts to perform differential gene expression analysis. In addition, we constructed novel genomic tools for O. grillus including a de novo genome and transcriptome. We discovered that trematode infection results in upregulation of amphipod transcripts associated with pigmentation and detection of external stimuli, and downregulation of multiple amphipod transcripts implicated in invertebrate immune responses, such as vacuolar ATPase genes. We hypothesize that suppression of immune genes and the altered expression of genes associated with coloration and behaviour may allow the trematode to persist in the amphipod and engage in further biochemical manipulation that promotes transmission. The genomic tools and transcriptomic analyses reported provide new opportunities to discover how parasites alter diverse pathways underlying host phenotypic changes in natural populations.},
	keywords = {amphipod, differential expression, ecological genomics, host{\textendash}parasite co-evolution, infection response, Orchestia grillus, parasite manipulation, population genetics, trematode},
	issn = {1365-294X},
	doi = {10.1111/mec.17093},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.17093},
	author = {Rand, David M. and Nunez, Joaquin C. B. and Williams, Shawn and Rong, Stephen and Burley, John T. and Neil, Kimberly B. and Spierer, Adam N. and McKerrow, Wilson and Johnson, David S. and Raynes, Yevgeniy and Fayton, Thomas J. and Skvir, Nicholas and Ferranti, David A. and Zeff, Maya Greenhill and Lyons, Amanda and Okami, Naima and Morgan, David M. and Kinney, Kealohanuiopuna and Brown, Bianca R. P. and Giblin, Anne E. and Cardon, Zoe G.}
}
@article {wittyngham_biotic_2021,
	title = {Biotic {Recovery} {Following} {Ice}-{Rafting} in a {Salt} {Marsh}},
	journal = {Estuaries and Coasts},
	year = {2021},
	month = {nov},
	issn = {1559-2723, 1559-2731},
	doi = {10.1007/s12237-021-01023-z},
	url = {https://link.springer.com/10.1007/s12237-021-01023-z},
	author = {Wittyngham, Serina S. and Pant, Manisha and Mart{\'\i}nez-Soto, Kayla and Johnson, David S.}
}
@article {lesser_cross-habitat_2021,
	title = {Cross-habitat access modifies the {\textquoteleft}trophic relay{\textquoteright} in {New} {England} saltmarsh ecosystems},
	journal = {Food Webs},
	volume = {29},
	year = {2021},
	month = {dec},
	pages = {e00206},
	issn = {23522496},
	doi = {10.1016/j.fooweb.2021.e00206},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352249621000197},
	author = {Lesser, Justin S. and Floyd, Olivia and Fedors, Katrina and Deegan, Linda A. and Johnson, David S. and Nelson, James A.}
}
@article {avolio_determinants_2021,
	title = {Determinants of community compositional change are equally affected by global change},
	journal = {Ecology Letters},
	volume = {24},
	number = {9},
	year = {2021},
	month = {sep},
	pages = {1892{\textendash}1904},
	issn = {1461-023X, 1461-0248},
	doi = {10.1111/ele.13824},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ele.13824},
	author = {Avolio, Meghan L. and Komatsu, Kimberly J. and Collins, Scott L. and Grman, Emily and Koerner, Sally E. and Tredennick, Andrew T. and Wilcox, Kevin R. and Baer, Sara and Boughton, Elizabeth H. and Britton, Andrea J. and Foster, Bryan and Gough, Laura and Hovenden, Mark and Isbell, Forest and Jentsch, Anke and Johnson, David S. and Knapp, Alan K. and Kreyling, Juergen and Langley, J. Adam and Lortie, Christopher and McCulley, Rebecca L. and McLaren, Jennie R. and Reich, Peter B. and Seabloom, Eric W. and Smith, Melinda D. and Suding, Katharine N. and Suttle, K. Blake and Tognetti, Pedro M.},
	editor = {Anderson, Marti}
}
@article {langley_ambient_2018,
	title = {Ambient changes exceed treatment effects on plant species abundance in global change experiments},
	journal = {Global Change Biology},
	volume = {24},
	number = {12},
	year = {2018},
	month = {dec},
	pages = {5668{\textendash}5679},
	issn = {1354-1013, 1365-2486},
	doi = {10.1111/gcb.14442},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/gcb.14442},
	author = {Langley, J. Adam and Chapman, Samantha K. and La Pierre, Kimberly J. and Avolio, Meghan and Bowman, William D. and Johnson, David S. and Isbell, Forest and Wilcox, Kevin R. and Foster, Bryan L. and Hovenden, Mark J. and Knapp, Alan K. and Koerner, Sally E. and Lortie, Christopher J. and Megonigal, James P. and Newton, Paul C. D. and Reich, Peter B. and Smith, Melinda D. and Suttle, Kenwyn B. and Tilman, David}
}
