@article {rand_parasite_2023, title = {Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system}, journal = {Molecular Ecology}, volume = {32}, year = {2023}, pages = {5028{\textendash}5041}, abstract = {Manipulation of host phenotypes by parasites is hypothesized to be an adaptive strategy enhancing parasite transmission across hosts and generations. Characterizing the molecular mechanisms of manipulation is important to advance our understanding of host{\textendash}parasite coevolution. The trematode (Levinseniella byrdi) is known to alter the colour and behaviour of its amphipod host (Orchestia grillus) presumably increasing predation of amphipods which enhances trematode transmission through its life cycle. We sampled 24 infected and 24 uninfected amphipods from a salt marsh in Massachusetts to perform differential gene expression analysis. In addition, we constructed novel genomic tools for O. grillus including a de novo genome and transcriptome. We discovered that trematode infection results in upregulation of amphipod transcripts associated with pigmentation and detection of external stimuli, and downregulation of multiple amphipod transcripts implicated in invertebrate immune responses, such as vacuolar ATPase genes. We hypothesize that suppression of immune genes and the altered expression of genes associated with coloration and behaviour may allow the trematode to persist in the amphipod and engage in further biochemical manipulation that promotes transmission. The genomic tools and transcriptomic analyses reported provide new opportunities to discover how parasites alter diverse pathways underlying host phenotypic changes in natural populations.}, keywords = {amphipod, differential expression, ecological genomics, host{\textendash}parasite co-evolution, infection response, Orchestia grillus, parasite manipulation, population genetics, trematode}, issn = {1365-294X}, doi = {10.1111/mec.17093}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.17093}, author = {Rand, David M. and Nunez, Joaquin C. B. and Williams, Shawn and Rong, Stephen and Burley, John T. and Neil, Kimberly B. and Spierer, Adam N. and McKerrow, Wilson and Johnson, David S. and Raynes, Yevgeniy and Fayton, Thomas J. and Skvir, Nicholas and Ferranti, David A. and Zeff, Maya Greenhill and Lyons, Amanda and Okami, Naima and Morgan, David M. and Kinney, Kealohanuiopuna and Brown, Bianca R. P. and Giblin, Anne E. and Cardon, Zoe G.} } @article {wang_hydro-morphodynamics_2022, title = {Hydro-morphodynamics triggered by extreme riverine floods in a mega fluvial-tidal delta}, journal = {Science of The Total Environment}, volume = {809}, year = {2022}, month = {feb}, pages = {152076}, issn = {00489697}, doi = {10.1016/j.scitotenv.2021.152076}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721071527}, author = {Wang, Jie and Dai, Zhijun and Fagherazzi, Sergio and Zhang, Xiaohe and Liu, Xiaoqiang} } @article {zhang_improving_2022, title = {Improving Channel Hydrological Connectivity in Coastal Hydrodynamic Models With Remotely Sensed Channel Networks}, journal = {Journal of Geophysical Research: Earth Surface}, volume = {127}, year = {2022}, pages = {e2021JF006294}, abstract = {Coastal wetlands are nourished by rivers and periodical tidal flows through complex, interconnected channels. However, in hydrodynamic models, channel dimensions with respect to model grid size and uncertainties in topography preclude the correct propagation of tidal and riverine signals. It is therefore crucial to enhance channel geomorphic connectivity and simplify sub-channel features based on remotely sensed networks for practical computational applications. Here, we utilize channel networks derived from diverse remote sensing imagery as a baseline to build a \~{}10 m resolution hydrodynamic model that covers the Wax Lake Delta and adjacent wetlands (\~{}360 km2) in coastal Louisiana, USA. In this richly gauged system, intensive calibrations are conducted with 18 synchronous field-observations of water levels taken in 2016, and discharge data taken in 2021. We modify channel geometry, targeting realism in channel connectivity. The results show that a minimum channel depth of 2 m and a width of four grid elements (approximatively 40 m) are required to enable a realistic tidal propagation in wetland channels. The optimal depth for tidal propagation can be determined by a simplified cost function method that evaluates the competition between flow travel time and alteration of the volume of the channels. The integration of high spatial-resolution models and remote sensing imagery provides a general framework to improve models performance in salt marshes, mangroves, deltaic wetlands, and tidal flats.}, keywords = {channel geometry, coastal numerical model, cost function, flow propagation, model performance, remote-sensed channel network}, issn = {2169-9011}, doi = {10.1029/2021JF006294}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1029/2021JF006294}, author = {Zhang, Xiaohe and Wright, Kyle and Passalacqua, Paola and Simard, Marc and Fagherazzi, Sergio} } @article {reed_responses_2022, title = {Responses of Coastal Ecosystems to Climate Change: Insights from Long-Term Ecological Research}, journal = {BioScience}, volume = {72}, year = {2022}, pages = {871{\textendash}888}, abstract = {Coastal ecosystems play a disproportionately large role in society, and climate change is altering their ecological structure and function, as well as their highly valued goods and services. In the present article, we review the results from decade-scale research on coastal ecosystems shaped by foundation species (e.g., coral reefs, kelp forests, coastal marshes, seagrass meadows, mangrove forests, barrier islands) to show how climate change is altering their ecological attributes and services. We demonstrate the value of site-based, long-term studies for quantifying the resilience of coastal systems to climate forcing, identifying thresholds that cause shifts in ecological state, and investigating the capacity of coastal ecosystems to adapt to climate change and the biological mechanisms that underlie it. We draw extensively from research conducted at coastal ecosystems studied by the US Long Term Ecological Research Network, where long-term, spatially extensive observational data are coupled with shorter-term mechanistic studies to understand the ecological consequences of climate change.}, issn = {0006-3568}, doi = {10.1093/biosci/biac006}, url = {https://doi.org/10.1093/biosci/biac006}, author = {Reed, Daniel C and Schmitt, Russell J and Burd, Adrian B and Burkepile, Deron E and Kominoski, John S and McGlathery, Karen J and Miller, Robert J and Morris, James T and Zinnert, Julie C} } @article {zhang_using_2022, title = {Using rapid repeat {SAR} interferometry to improve hydrodynamic models of flood propagation in coastal wetlands}, journal = {Advances in Water Resources}, volume = {159}, year = {2022}, month = {jan}, pages = {104088}, issn = {03091708}, doi = {10.1016/j.advwatres.2021.104088}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0309170821002402}, author = {Zhang, Xiaohe and Jones, Cathleen E. and Oliver-Cabrera, Talib and Simard, Marc and Fagherazzi, Sergio} } @article {colombano_climate_2021, title = {Climate {Change} {Implications} for {Tidal} {Marshes} and {Food} {Web} {Linkages} to {Estuarine} and {Coastal} {Nekton}}, journal = {Estuaries and Coasts}, volume = {44}, number = {6}, year = {2021}, month = {sep}, pages = {1637{\textendash}1648}, abstract = {Abstract Climate change is altering naturally fluctuating environmental conditions in coastal and estuarine ecosystems across the globe. Departures from long-term averages and ranges of environmental variables are increasingly being observed as directional changes [e.g., rising sea levels, sea surface temperatures (SST)] and less predictable periodic cycles (e.g., Atlantic or Pacific decadal oscillations) and extremes (e.g., coastal flooding, marine heatwaves). Quantifying the short- and long-term impacts of climate change on tidal marsh seascape structure and function for nekton is a critical step toward fisheries conservation and management. The multiple stressor framework provides a promising approach for advancing integrative, cross-disciplinary research on tidal marshes and food web dynamics. It can be used to quantify climate change effects on and interactions between coastal oceans (e.g., SST, ocean currents, waves) and watersheds (e.g., precipitation, river flows), tidal marsh geomorphology (e.g., vegetation structure, elevation capital, sedimentation), and estuarine and coastal nekton (e.g., species distributions, life history adaptations, predator-prey dynamics). However, disentangling the cumulative impacts of multiple interacting stressors on tidal marshes, whether the effects are additive, synergistic, or antagonistic, and the time scales at which they occur, poses a significant research challenge. This perspective highlights the key physical and ecological processes affecting tidal marshes, with an emphasis on the trophic linkages between marsh production and estuarine and coastal nekton, recommended for consideration in future climate change studies. Such studies are urgently needed to understand climate change effects on tidal marshes now and into the future.}, issn = {1559-2723, 1559-2731}, doi = {10.1007/s12237-020-00891-1}, url = {https://link.springer.com/10.1007/s12237-020-00891-1}, author = {Colombano, Denise D. and Litvin, Steven Y. and Ziegler, Shelby L. and Alford, Scott B. and Baker, Ronald and Barbeau, Myriam A. and Cebrian, Just and Connolly, Rod M. and Currin, Carolyn A. and Deegan, Linda A. and Lesser, Justin S. and Martin, Charles W. and McDonald, Ashley E. and McLuckie, Catherine and Morrison, Blair H. and Pahl, James W. and Risse, L. Mark and Smith, Joseph A. M. and Staver, Lorie W. and Turner, R. Eugene and Waltham, Nathan J.} } @article {ziegler_geographic_2021, title = {Geographic {Variation} in {Salt} {Marsh} {Structure} and {Function} for {Nekton}: a {Guide} to {Finding} {Commonality} {Across} {Multiple} {Scales}}, journal = {Estuaries and Coasts}, volume = {44}, number = {6}, year = {2021}, month = {sep}, pages = {1497{\textendash}1507}, issn = {1559-2723, 1559-2731}, doi = {10.1007/s12237-020-00894-y}, url = {https://link.springer.com/10.1007/s12237-020-00894-y}, author = {Ziegler, Shelby L. and Baker, Ronald and Crosby, Sarah C. and Colombano, Denise D. and Barbeau, Myriam A. and Cebrian, Just and Connolly, Rod M. and Deegan, Linda A. and Gilby, Ben L. and Mallick, Debbrota and Martin, Charles W. and Nelson, James A. and Reinhardt, James F. and Simenstad, Charles A. and Waltham, Nathan J. and Worthington, Thomas A. and Rozas, Lawrence P.} } @article {jin_river_2021, title = {River body extraction from sentinel-{2A}/{B} {MSI} images based on an adaptive multi-scale region growth method}, journal = {Remote Sensing of Environment}, volume = {255}, year = {2021}, month = {mar}, pages = {112297}, issn = {00344257}, doi = {10.1016/j.rse.2021.112297}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0034425721000158}, author = {Jin, Song and Liu, Yongxue and Fagherazzi, Sergio and Mi, Huan and Qiao, Gang and Xu, Wenxuan and Sun, Chao and Liu, Yongchao and Zhao, Bingxue and Fichot, C{\'e}dric G.} } @article {waltham_tidal_2021, title = {Tidal {Marsh} {Restoration} {Optimism} in a {Changing} {Climate} and {Urbanizing} {Seascape}}, journal = {Estuaries and Coasts}, volume = {44}, number = {6}, year = {2021}, month = {sep}, pages = {1681{\textendash}1690}, issn = {1559-2723, 1559-2731}, doi = {10.1007/s12237-020-00875-1}, url = {https://link.springer.com/10.1007/s12237-020-00875-1}, author = {Waltham, Nathan J. and Alcott, Caitlin and Barbeau, Myriam A. and Cebrian, Just and Connolly, Rod M. and Deegan, Linda A. and Dodds, Kate and Goodridge Gaines, Lucy A. and Gilby, Ben L. and Henderson, Christopher J. and McLuckie, Catherine M. and Minello, Thomas J. and Norris, Gregory S. and Ollerhead, Jeff and Pahl, James and Reinhardt, James F. and Rezek, Ryan J. and Simenstad, Charles A. and Smith, Joseph A. M. and Sparks, Eric L. and Staver, Lorie W. and Ziegler, Shelby L. and Weinstein, Michael P.} } @article {PIE487, title = {Determining the drivers of suspended sediment dynamics in tidal marsh-influenced estuaries using high-resolution ocean color remote sensing}, journal = {Remote Sensing of Environment}, volume = {240}, year = {2020}, note = {PI}, keywords = {LTER-PIE, remote-sensing reflectance, river discharge, salt marsh, sediment budget, suspended sediment concentration, tidal asymmetry}, doi = {10.1016/j.rse.2020.111682}, author = {Zhang, X. and Fichot, C.G. and Baracco, C. and Guo, R. and Neugebauer, S. and Bengtsson, Z. and Ganju, N.K. and Fagherazzi, S.} } @article {zhang_divergence_2020, title = {Divergence of {Sediment} {Fluxes} {Triggered} by {Sea}-{Level} {Rise} {Will} {Reshape} {Coastal} {Bays}}, journal = {Geophysical Research Letters}, volume = {47}, number = {13}, year = {2020}, issn = {0094-8276, 1944-8007}, doi = {10.1029/2020GL087862}, url = {https://onlinelibrary.wiley.com/doi/10.1029/2020GL087862}, author = {Zhang, Xiaohe and Leonardi, Nicoletta and Donatelli, Carmine and Fagherazzi, Sergio} } @article {zhang_divergence_2020, title = {Divergence of Sediment Fluxes Triggered by Sea-Level Rise Will Reshape Coastal Bays}, journal = {Geophysical Research Letters}, volume = {47}, year = {2020}, pages = {e2020GL087862}, abstract = {Sediment budget and sediment availability are direct metrics for evaluating the resilience of coastal bays to sea-level rise (SLR). Here we use a high-resolution numerical model of a tidally dominated marsh-lagoon system to explore feedbacks between SLR and sediment dynamics. SLR augments tidal prism and inundation depth, facilitating sediment deposition on the marsh platform. At the same time, our results indicate that SLR enhances ebb-dominated currents and increases sediment resuspension, reducing the sediment-trapping capacity of tidal flats and bays and leading to a negative sediment budget for the entire system. This bimodal distribution of sediments budget trajectories will have a profound impact on the morphology of coastal bays, increasing the difference in elevation between salt marshes and tidal flats and potentially affecting intertidal ecosystems. Our results also clearly indicate that landforms lower with respect to the tidal frame are more affected by SLR than salt marshes.}, keywords = {bed composition, numerical modeling, salt marsh, sea-level rise, sediment budget, tidal flats}, issn = {1944-8007}, doi = {10.1029/2020GL087862}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1029/2020GL087862}, author = {Zhang, Xiaohe and Leonardi, Nicoletta and Donatelli, Carmine and Fagherazzi, Sergio} } @article {donatelli_dynamics_2020, title = {Dynamics of {Marsh}-{Derived} {Sediments} in {Lagoon}-{Type} {Estuaries}}, journal = {Journal of Geophysical Research: Earth Surface}, volume = {125}, number = {12}, year = {2020}, month = {dec}, issn = {2169-9003, 2169-9011}, doi = {10.1029/2020JF005751}, url = {https://onlinelibrary.wiley.com/doi/10.1029/2020JF005751}, author = {Donatelli, Carmine and Kalra, Tarandeep Singh and Fagherazzi, Sergio and Zhang, Xiaohe and Leonardi, Nicoletta} } @article {donatelli_dynamics_2020, title = {Dynamics of Marsh-Derived Sediments in Lagoon-Type Estuaries}, journal = {Journal of Geophysical Research: Earth Surface}, volume = {125}, year = {2020}, pages = {e2020JF005751}, abstract = {Salt marshes are valuable ecosystems that must trap sediments and accrete in order to counteract the deleterious effect of sea level rise. Previous studies have shown that the capacity of marshes to build up vertically depends on both autogenous and exogenous processes including ecogeomorphic feedbacks and sediment supply from in-land and coastal ocean. There have been numerous efforts to quantify the role played by the sediments coming from marsh edge erosion on the resistance of salt marshes to sea level rise. However, the majority of existing studies investigating the interplay between lateral and vertical dynamics use simplified modeling approaches, and they do not consider that marsh retreat can affect the regional-scale hydrodynamics and sediment retention in back-barrier basins. In this study, we evaluated the fate of the sediments originating from marsh lateral loss by using high-resolution numerical model simulations of Jamaica Bay, a small lagoonal estuary located in New York City. Our findings show that up to 42\% of the sediment released during marsh edge erosion deposits on the shallow areas of the basin and over the vegetated marsh platforms, contributing positively to the sediment budget of the remaining salt marshes. Furthermore, we demonstrate that with the present-day sediment supply from the ocean, the system cannot keep pace with sea level rise even accounting for the sediment liberated in the bay through marsh degradation. Our study highlights the relevance of multiple sediment sources for the maintenance of the marsh complex.}, keywords = {Jamaica Bay, marsh erosion, sea level rise, sediment recycling}, issn = {2169-9011}, doi = {10.1029/2020JF005751}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1029/2020JF005751}, author = {Donatelli, Carmine and Kalra, Tarandeep Singh and Fagherazzi, Sergio and Zhang, Xiaohe and Leonardi, Nicoletta} } @article {sills_fisheries_2020, title = {Fisheries rely on threatened salt marshes}, journal = {Science}, volume = {370}, number = {6517}, year = {2020}, month = {nov}, pages = {670{\textendash}671}, issn = {0036-8075, 1095-9203}, doi = {10.1126/science.abe9332}, url = {https://www.science.org/doi/10.1126/science.abe9332}, author = {Baker, Ronald and Taylor, Matthew D. and Able, Kenneth W. and Beck, Michael W. and Cebrian, Just and Colombano, Denise D. and Connolly, Rod M. and Currin, Carolyn and Deegan, Linda A. and Feller, Ilka C. and Gilby, Ben L. and Kimball, Matthew E. and Minello, Thomas J. and Rozas, Lawrence P. and Simenstad, Charles and Turner, R. Eugene and Waltham, Nathan J. and Weinstein, Michael P. and Ziegler, Shelby L. and zu Ermgassen, Philine S.E. and Alcott, Caitlin and Alford, Scott B. and Barbeau, Myriam A. and Crosby, Sarah C. and Dodds, Kate and Frank, Alyssa and Goeke, Janelle and Goodridge Gaines, Lucy A. and Hardcastle, Felicity E. and Henderson, Christopher J. and James, W. Ryan and Kenworthy, Matthew D. and Lesser, Justin and Mallick, Debbrota and Martin, Charles W. and McDonald, Ashley E. and McLuckie, Catherine and Morrison, Blair H. and Nelson, James A. and Norris, Gregory S. and Ollerhead, Jeff and Pahl, James W. and Ramsden, Sarah and Rehage, Jennifer S. and Reinhardt, James F. and Rezek, Ryan J. and Risse, L. Mark and Smith, Joseph A.M. and Sparks, Eric L. and Staver, Lorie W.}, editor = {Sills, Jennifer} } @article {hautier_general_2020, title = {General destabilizing effects of eutrophication on grassland productivity at multiple spatial scales}, journal = {Nature Communications}, volume = {11}, number = {1}, year = {2020}, month = {dec}, pages = {5375}, abstract = {Abstract Eutrophication is a widespread environmental change that usually reduces the stabilizing effect of plant diversity on productivity in local communities. Whether this effect is scale dependent remains to be elucidated. Here, we determine the relationship between plant diversity and temporal stability of productivity for 243 plant communities from 42 grasslands across the globe and quantify the effect of chronic fertilization on these relationships. Unfertilized local communities with more plant species exhibit greater asynchronous dynamics among species in response to natural environmental fluctuations, resulting in greater local stability (alpha stability). Moreover, neighborhood communities that have greater spatial variation in plant species composition within sites (higher beta diversity) have greater spatial asynchrony of productivity among communities, resulting in greater stability at the larger scale (gamma stability). Importantly, fertilization consistently weakens the contribution of plant diversity to both of these stabilizing mechanisms, thus diminishing the positive effect of biodiversity on stability at differing spatial scales. Our findings suggest that preserving grassland functional stability requires conservation of plant diversity within and among ecological communities.}, issn = {2041-1723}, doi = {10.1038/s41467-020-19252-4}, url = {https://www.nature.com/articles/s41467-020-19252-4}, author = {Hautier, Yann and Zhang, Pengfei and Loreau, Michel and Wilcox, Kevin R. and Seabloom, Eric W. and Borer, Elizabeth T. and Byrnes, Jarrett E. K. and Koerner, Sally E. and Komatsu, Kimberly J. and Lefcheck, Jonathan S. and Hector, Andy and Adler, Peter B. and Alberti, Juan and Arnillas, Carlos A. and Bakker, Jonathan D. and Brudvig, Lars A. and Bugalho, Miguel N. and Cadotte, Marc and Caldeira, Maria C. and Carroll, Oliver and Crawley, Mick and Collins, Scott L. and Daleo, Pedro and Dee, Laura E. and Eisenhauer, Nico and Eskelinen, Anu and Fay, Philip A. and Gilbert, Benjamin and Hansar, Amandine and Isbell, Forest and Knops, Johannes M. H. and MacDougall, Andrew S. and McCulley, Rebecca L. and Moore, Joslin L. and Morgan, John W. and Mori, Akira S. and Peri, Pablo L. and Pos, Edwin T. and Power, Sally A. and Price, Jodi N. and Reich, Peter B. and Risch, Anita C. and Roscher, Christiane and Sankaran, Mahesh and Sch{\"u}tz, Martin and Smith, Melinda and Stevens, Carly and Tognetti, Pedro M. and Virtanen, Risto and Wardle, Glenda M. and Wilfahrt, Peter A. and Wang, Shaopeng} } @article {zhang_morphology_2020, title = {On the morphology of radial sand ridges}, journal = {Earth Surface Processes and Landforms}, volume = {45}, number = {11}, year = {2020}, month = {sep}, pages = {2613{\textendash}2630}, issn = {0197-9337, 1096-9837}, doi = {10.1002/esp.4917}, url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.4917}, author = {Zhang, Weina and Zhang, Xiaohe and Huang, Huiming and Wang, Yigang and Fagherazzi, Sergio} } @article {PIE494, title = {A nonlinear relationship between marsh size and sediment trapping capacity compromises salt marshes{\textquoteright} stability.}, journal = {Geology}, year = {2020}, note = {PI}, keywords = {LTER-PIE, marsh stability, salt marsh, sea level rise, sediment}, doi = {10.1130/G47131.1}, author = {Donatelli, C. and Zhang, X. and Ganju, N.K. and Aretxabaleta, A.L. and Fagherazzi, S. and Leonardi, N.} } @article {PIE463, title = {Fate of cohesive sediments in a marsh-dominated estuary}, journal = {Advances in Water Resources}, volume = {125}, year = {2019}, note = {Grad}, pages = {32-40}, keywords = {disturbance, LTER-PIE, numerical modelling, ponds expansion, salt marshes, sediment exchange, trapping capacity}, doi = {10.1016/j.advwatres.2019.01.003}, author = {Zhang, X. and Leonardi, N. and Donatelli, C. and Fagherazzi, S.} } @article {zhang_fate_2019, title = {Fate of cohesive sediments in a marsh-dominated estuary}, journal = {Advances in Water Resources}, volume = {125}, year = {2019}, month = {mar}, pages = {32{\textendash}40}, issn = {03091708}, doi = {10.1016/j.advwatres.2019.01.003}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0309170818305566}, author = {Zhang, Xiaohe and Leonardi, Nicoletta and Donatelli, Carmine and Fagherazzi, Sergio} } @mastersthesis {PIE461, title = {Carbon exchange and sediment deposition in a heterogeneous New England salt marsh}, volume = {MS}, year = {2018}, note = {Grad}, school = {Villanova University}, type = {mastersthesis}, address = {Villanova, PA}, keywords = {carbon, disturbance, LTER-PIE, organic matter, salt marsh, sediment}, author = {Zawatski, M.} } @article {zuidema_controls_2018, title = {Controls of {Chloride} {Loading} and {Impairment} at the {River} {Network} {Scale} in {New} {England}}, journal = {Journal of Environmental Quality}, volume = {47}, number = {4}, year = {2018}, month = {jul}, pages = {839{\textendash}847}, issn = {00472425}, doi = {10.2134/jeq2017.11.0418}, url = {http://doi.wiley.com/10.2134/jeq2017.11.0418}, author = {Zuidema, Shan and Wollheim, Wilfred M. and Mineau, Madeleine M. and Green, Mark B. and Stewart, Robert J.} } @article {wilcox_asynchrony_2017, title = {Asynchrony among local communities stabilises ecosystem function of metacommunities}, journal = {Ecology Letters}, volume = {20}, number = {12}, year = {2017}, month = {dec}, pages = {1534{\textendash}1545}, issn = {1461-023X, 1461-0248}, doi = {10.1111/ele.12861}, url = {https://onlinelibrary.wiley.com/doi/10.1111/ele.12861}, author = {Wilcox, Kevin R. and Tredennick, Andrew T. and Koerner, Sally E. and Grman, Emily and Hallett, Lauren M. and Avolio, Meghan L. and La Pierre, Kimberly J. and Houseman, Gregory R. and Isbell, Forest and Johnson, David Samuel and Alatalo, Juha M. and Baldwin, Andrew H. and Bork, Edward W. and Boughton, Elizabeth H. and Bowman, William D. and Britton, Andrea J. and Cahill, James F. and Collins, Scott L. and Du, Guozhen and Eskelinen, Anu and Gough, Laura and Jentsch, Anke and Kern, Christel and Klanderud, Kari and Knapp, Alan K. and Kreyling, Juergen and Luo, Yiqi and McLaren, Jennie R. and Megonigal, Patrick and Onipchenko, Vladimir and Prev{\'e}y, Janet and Price, Jodi N. and Robinson, Clare H. and Sala, Osvaldo E. and Smith, Melinda D. and Soudzilovskaia, Nadejda A. and Souza, Lara and Tilman, David and White, Shannon R. and Xu, Zhuwen and Yahdjian, Laura and Yu, Qiang and Zhang, Pengfei and Zhang, Yunhai}, editor = {Gurevitch, Jessica} } @article {PIE439, title = {Methods to summarize change among land categories across time intervals}, journal = {Journal of Land Use Science}, volume = {12}, number = {4}, year = {2017}, note = {PI Coastal}, pages = {218-230}, keywords = {category, disturbance, flow matrix, GIS, land change, LTER-PIE, time, transition}, doi = {10.1080/1747423X.2017.1338768}, author = {Pontius, R.G., Jr. and Krithivasan, R. and Sauls, L. and Yan, Y. and Zhang, Y.} } @article {PIE358, title = {Latitudinal variation in the availability and use of dissolved organic nitrogen in Atlantic coast salt marshes}, journal = {Ecology}, year = {2014}, note = {Collab Plum Data}, keywords = {dissolved organic nitrogen, inorganic nutrients, LTER-PIE, primary production, salt marshes}, doi = {10.1890/13-1823.1}, author = {Mozdzer, T.J. and McGlathery, K.J. and Mills, A.L. and Zieman, J.C.} } @article {PIE364, title = {Fluxes of water, sediments, and biogeochemical compounds in salt marshes}, journal = {Ecological Processes}, year = {2013}, note = {PI Plum Data}, keywords = {disturbance, estuarine fluxes, LTER-PIE, organic matter, salt marsh, tides}, doi = {10.1186/2192-1709-2-3}, author = {Fagherazzi, S. and Wiberg, P.L. and Temmerman, S. and Struyf, E. and Zhao, Y. and Raymond, P. A.} } @mastersthesis {PIE279, title = {Characterizing land changes over several points in time}, volume = {M.S.}, year = {2011}, note = {Grad}, school = {Clark University}, type = {mastersthesis}, address = {Worcester, MA}, keywords = {disturbance, geospatial modeling, land use change, LTER-PIE}, author = {Zhang, Y.} } @article {PIE272, title = {Thinking outside the channel: Modeling nitrogen cycling in networked river ecosystems}, journal = {Frontiers in Ecology and Environment}, volume = {9}, year = {2011}, note = {PI Plum Data}, pages = {229-238}, keywords = {inorganic nitrogen, LTER-PIE, nitrogen cycling modeling, rivers}, doi = {10.1890/080211}, author = {Helton, A.M. and Poole, G.C. and Meyer, J.L. and Wollheim, W.M. and Peterson, B.J. and Mulholland, P.J. and Bernhardt, E.S. and Stanford, J.A. and Arango, C. and Ashkenas, L.R. and Cooper, L.W. and Dodds, W.K. and Gregory, S.V. and Hall, R.O. and Hamilton, S.K. and Johnson, S.L. and McDowell, W.H. and Potter, J.D. and Tank, J.L. and Thomas, S.M. and Valett, H.M. and Webster, J.R. and Zeglin, L.} } @article {PIE264, title = {Wetland-estuarine-shelf interactions in the Plum Island Sound and Merrimack River in the Massachusetts coast}, journal = {Journal of Geophysical Research}, volume = {115}, number = {C10(C10039))}, year = {2010}, note = {PD Plum Data; PI Plum Data}, pages = {1-13}, keywords = {disturbance, estuaries, hydrodynamics, LTER-PIE}, doi = {10.1029/2009JC006085}, author = {Zhao, L. and Chen, C. and Vallino, J. and Hopkinson, C. and Beardsley, R.C. and Lin, H. and Lerczak, J.} } @phdthesis {PIE359, title = {Variation in the availability and utilization of dissolved organic nitrogen by the smooth cordgrass, Spartina alterniflora}, volume = {PhD.}, year = {2009}, note = {Collab Plum Data}, pages = {179}, school = {University of Virginia}, type = {phdthesis}, address = {Charlottesville, VA}, keywords = {inorganic nitrogen, LTER-PIE, primary production, salt marshes}, author = {Mozdzer, T.J.} } @article {PIE230, title = {Environmental turbulent mixing controls on air-water gas exchange in marine and aquatic systems}, journal = {Geophysical Research Letters}, volume = {34}, year = {2007}, note = {PD Plum Data}, keywords = {diffusion, estuaries, gas transfer, LTER-PIE, oxygen, carbon dioxide, rivers}, doi = {10.1029/2006GL028790}, author = {Zappa, C.J. and McGillis, W.R. and Raymond, P.A. and Edson, J.B. and Hintsa, E.J. and Zemmelink, H.J. and Dacey, J.W.H. and Ho, D.T.} } @article {PIE118, title = {Rapid screening for freshwater bacterial groups using reverse line blot hybridization}, journal = {Applied Environmental Microbiology}, volume = {69}, year = {2003}, note = {PD Plum Data}, pages = {5875-5883}, keywords = {bacteria, freshwater, genome, LTER-PIE}, doi = {10.1128/AEM.69.10.5875-5883.2003}, author = {Zwart, G. and van Hannen, E.J. and Kamst-van Agerveld, M.P. and van der Gucht, K. and Lindstrom, E.S. and Van Wichelen, J. and Lauridsen, T. and Crump, B.C. and Han, S.K. and Declerck, S.} } @article {PIE117, title = {Variation in surface turbulence and the gas transfer velocity in estuaries over a tidal cycle in a macrotidal estuary.}, journal = {Estuaries}, volume = {26}, number = {6}, year = {2003}, note = {PD Plum Data}, pages = {1401-1415}, keywords = {gas transfer velocity, LTER-PIE, macro-tidal estuary, turbulence}, doi = {10.1007/BF02803649}, author = {Zappa, C. J. and Raymond, P.A. and Terray, E.A. and McGillis, W.R.} } @article {PIE91, title = {Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of freshwater lakes and rivers.}, journal = {Aquatic Microbial Ecology}, volume = {28}, year = {2002}, note = {PD Plum Data}, pages = {141-155}, keywords = {16S rRNA, bacteria, genome, lakes, LTER-PIE, population dynamics, rivers}, doi = {10.3354/ame028141}, author = {Zwart, G. and Crump, B.C. and Kamst-van Agterveld, M.P. and Hagen, F. and Han, S.K.} }