@article {8839,
	title = {Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes},
	journal = {Applied and Environmental Microbiology},
	volume = {89},
	year = {2023},
	month = {May-11-2025},
	issn = {0099-2240},
	doi = {10.1128/aem.00988-23},
	url = {https://journals.asm.org/doi/10.1128/aem.00988-23},
	author = {P{\'e}rez Castro, Sherlynette and Peredo, Elena L. and Mason, Olivia U. and Vineis, Joseph and Bowen, Jennifer L. and Mortazavi, Behzad and Ganesh, Anakha and Ruff, S. Emil and Paul, Blair G. and Giblin, Anne E. and Cardon, Zoe G.},
	editor = {Glass, Jennifer B.}
}
@article {viana_four_2023,
	title = {Four Fundamental Questions to Evaluate Land Change Models with an Illustration of a Cellular Automata{\textendash}Markov Model},
	journal = {Annals of the American Association of Geographers},
	volume = {113},
	year = {2023},
	pages = {2497{\textendash}2511},
	abstract = {Numerous models exist for users to simulate land change to communicate with an audience concerning future land change. This article raises four fundamental questions to help model users decide whether to use any model: (1) Can the user understand the model? (2) Can the audience understand the model? (3) Can the user control the model? (4) Does the model address the goals of the specific application? This article applies these questions to the popular cellular automata{\textendash}Markov (CA{\textendash}Markov) model as IDRISI{\textquoteright}s CA{\textendash}Markov module expresses. Sensitivity analysis examines 120 ways to set the module{\textquoteright}s parameters. Verification compares the module{\textquoteright}s behavior to the software{\textquoteright}s documentation. Results show that the cellular automata{\textquoteright}s allocation fails to follow the quantity of change that the Markov module computes. The module{\textquoteright}s behavior is likely to cause users to misinterpret the validation metrics and to miscommunicate with audiences. Thus, the answers to the four questions were not satisfactory for this article{\textquoteright}s case study. This article{\textquoteright}s framework helps users to judge a model{\textquoteright}s appropriateness for a specific application by combining sensitivity analysis with verification in a manner that helps to interpret validation. Users should answer the four questions as they decide whether to use any software{\textquoteright}s modules.},
	keywords = {an{\'a}lisis de sensibilidad, CA-Markov, CA{\textendash}Markov, IDRISI software, IDRISI软件, sensitivity analysis, software IDRISI, validaci{\'o}n, Validation, verificaci{\'o}n, verification, 敏感性分析, 确认, 验证},
	issn = {2469-4452},
	doi = {10.1080/24694452.2023.2232435},
	url = {https://doi.org/10.1080/24694452.2023.2232435},
	author = {Viana, Cl{\'a}udia M. and Pontius Jr., Robert Gilmore and Rocha, Jorge}
}
@article {8840,
	title = {Microbial chemolithoautotrophs are abundant in salt marsh sediment following long-term experimental nitrate enrichment},
	journal = {FEMS Microbiology Letters},
	volume = {370},
	year = {2023},
	month = {May-01-2024},
	doi = {10.1093/femsle/fnad082},
	url = {https://academic.oup.com/femsle/article/doi/10.1093/femsle/fnad082/7237467},
	author = {Vineis, Joseph H and Bulseco, Ashley N and Bowen, Jennifer L}
}
@article {8836,
	title = {Sediment Exchange Across Coastal Barrier Landscapes Alters Ecosystem Extents},
	journal = {Geophysical Research Letters},
	volume = {5017},
	year = {2023},
	month = {Jul-17-2023},
	issn = {0094-8276},
	doi = {10.1029/2023GL103680},
	url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2023GL103680},
	author = {Reeves, I. R. B. and Moore, L. J. and Valentine, K. and Fagherazzi, S. and Kirwan, M. L.}
}
@article {gourgue_biogeomorphic_2022,
	title = {Biogeomorphic modeling to assess the resilience of tidal-marsh restoration to sea level rise and sediment supply},
	journal = {Earth Surface Dynamics},
	volume = {10},
	year = {2022},
	pages = {531{\textendash}553},
	abstract = {There is an increasing demand for the creation and restoration of tidal marshes around the world, as they provide highly valued ecosystem services. Yet restored tidal marshes are strongly vulnerable to factors such as sea level rise and declining sediment supply. How fast the restored ecosystem develops, how resilient it is to sea level rise, and how this can be steered by restoration design are key questions that are typically challenging to assess due to the complex biogeomorphic feedback processes involved. In this paper, we apply a biogeomorphic model to a specific tidal-marsh restoration project planned by dike breaching. Our modeling approach integrates tidal hydrodynamics, sediment transport, and vegetation dynamics, accounting for relevant fine-scale flow{\textendash}vegetation interactions (less than 1 m2) and their impact on vegetation and landform development at the landscape scale (several km2) and in the long term (several decades). Our model performance is positively evaluated against observations of vegetation and geomorphic development in adjacent tidal marshes. Model scenarios demonstrate that the restored tidal marsh can keep pace with realistic rates of sea level rise and that its resilience is more sensitive to the availability of suspended sediments than to the rate of sea level rise. We further demonstrate that restoration design options can steer marsh resilience, as they affect the rates and spatial patterns of biogeomorphic development. By varying the width of two dike breaches, which serve as tidal inlets to the restored marsh, we show that a larger difference in the width of the two inlets leads to higher biogeomorphic diversity in restored habitats. This study showcases that biogeomorphic modeling can support management choices in restoration design to optimize tidal-marsh development towards sustainable restoration goals.},
	issn = {2196-6311},
	doi = {10.5194/esurf-10-531-2022},
	url = {https://esurf.copernicus.org/articles/10/531/2022/},
	author = {Gourgue, Olivier and van Belzen, Jim and Schwarz, Christian and Vandenbruwaene, Wouter and Vanlede, Joris and Belliard, Jean-Philippe and Fagherazzi, Sergio and Bouma, Tjeerd J. and van de Koppel, Johan and Temmerman, Stijn}
}
@article {robison_dominance_2022,
	title = {Dominance of {Diffusive} {Methane} {Emissions} {From} {Lowland} {Headwater} {Streams} {Promotes} {Oxidation} and {Isotopic} {Enrichment}},
	journal = {Frontiers in Environmental Science},
	volume = {9},
	year = {2022},
	pages = {791305},
	abstract = {Inland waters are the largest natural source of methane (CH 4 ) to the atmosphere, yet the contribution from small streams to this flux is not clearly defined. To fully understand CH 4 emissions from streams and rivers, we must consider the relative importance of CH 4 emission pathways, the prominence of microbially-mediated production and oxidation of CH 4 , and the isotopic signature of emitted CH 4 . Here, we construct a complete CH 4 emission budgets for four lowland headwater streams by quantifying diffusive CH 4 emissions and comparing them to previously published rates of ebullitive emissions. We also examine the isotopic composition of CH 4 along with the sediment microbial community to investigate production and oxidation across the streams. We find that all four streams are supersaturated with respect to CH 4 with diffusive emissions accounting for approximately 78{\textendash}100\% of total CH 4 emissions. Isotopic and microbial data suggest CH 4 oxidation is prevalent across the streams, depleting approximately half of the dissolved CH 4 pool before emission. We propose a conceptual model of CH 4 production, oxidation, and emission from small streams, where the dominance of diffusive emissions is greater compared to other aquatic ecosystems, and the impact of CH 4 oxidation is observable in the emitted isotopic values. As a result, we suggest the CH 4 emitted from small streams is isotopically heavy compared to lentic ecosystems. Our results further demonstrate streams are important components of the global CH 4 cycle yet may be characterized by a unique pattern of cycling and emission that differentiate them from other aquatic ecosystems.},
	issn = {2296-665X},
	doi = {10.3389/fenvs.2021.791305},
	url = {https://www.frontiersin.org/articles/10.3389/fenvs.2021.791305/full},
	author = {Robison, Andrew L. and Wollheim, Wilfred M. and Perryman, Clarice R. and Cotter, Annie R. and Mackay, Jessica E. and Varner, Ruth K. and Clarizia, Paige and Ernakovich, Jessica G.}
}
@phdthesis {8662,
	title = {Nutrient influence on microbial structure and function within salt marsh sediments},
	volume = {Ph.D.},
	year = {2022},
	school = {Northeastern University},
	type = {phdthesis},
	keywords = {community dynamics, LTER-PIE, microbes, nutrients, salt marsh, sediments},
	author = {Vineis, J. H}
}
@article {iwaniec_connectivity_2021,
	title = {Connectivity: insights from the {U}.{S}. {Long} {Term} {Ecological} {Research} {Network}},
	journal = {Ecosphere},
	volume = {12},
	number = {5},
	year = {2021},
	month = {may},
	issn = {2150-8925, 2150-8925},
	doi = {10.1002/ecs2.3432},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/ecs2.3432},
	author = {Iwaniec, David M. and Gooseff, Michael and Suding, Katharine N. and Samuel Johnson, David and Reed, Daniel C. and Peters, Debra P. C. and Adams, Byron and Barrett, John E. and Bestelmeyer, Brandon T. and Castorani, Max C. N. and Cook, Elizabeth M. and Davidson, Melissa J. and Groffman, Peter M. and Hanan, Niall P. and Huenneke, Laura F. and Johnson, Pieter T. J. and McKnight, Diane M. and Miller, Robert J. and Okin, Gregory S. and Preston, Daniel L. and Rassweiler, Andrew and Ray, Chris and Sala, Osvaldo E. and Schooley, Robert L. and Seastedt, Timothy and Spasojevic, Marko J. and Vivoni, Enrique R.}
}
@article {8664,
	title = {Diel light cycles affect phytoplankton competition in the global ocean},
	journal = {BioRxiv},
	volume = {2021.05.19.444874},
	year = {2021},
	type = {preprint},
	keywords = {biogeography, competition, growth rates, light cycles, LTER-PIE, nutrients, phytoplankton},
	doi = {10.1101/2021.05.19.444874 },
	author = {Tsakalakis, I. and Follows, J. and Dutkiewicz, S. and Follett, C.L and Vallino, J.J.}
}
@article {robison_spatial_2021,
	title = {Spatial and temporal heterogeneity of methane ebullition in lowland headwater streams and the impact on sampling design},
	journal = {Limnology and Oceanography},
	volume = {66},
	number = {12},
	year = {2021},
	month = {dec},
	pages = {4063{\textendash}4076},
	issn = {0024-3590, 1939-5590},
	doi = {10.1002/lno.11943},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/lno.11943},
	author = {Robison, Andrew L. and Wollheim, Wilfred M. and Turek, Bonnie and Bova, Cynthia and Snay, Carter and Varner, Ruth K.}
}
@article {hautier_general_2020,
	title = {General destabilizing effects of eutrophication on grassland productivity at multiple spatial scales},
	journal = {Nature Communications},
	volume = {11},
	number = {1},
	year = {2020},
	month = {dec},
	pages = {5375},
	abstract = {Abstract Eutrophication is a widespread environmental change that usually reduces the stabilizing effect of plant diversity on productivity in local communities. Whether this effect is scale dependent remains to be elucidated. Here, we determine the relationship between plant diversity and temporal stability of productivity for 243 plant communities from 42 grasslands across the globe and quantify the effect of chronic fertilization on these relationships. Unfertilized local communities with more plant species exhibit greater asynchronous dynamics among species in response to natural environmental fluctuations, resulting in greater local stability (alpha stability). Moreover, neighborhood communities that have greater spatial variation in plant species composition within sites (higher beta diversity) have greater spatial asynchrony of productivity among communities, resulting in greater stability at the larger scale (gamma stability). Importantly, fertilization consistently weakens the contribution of plant diversity to both of these stabilizing mechanisms, thus diminishing the positive effect of biodiversity on stability at differing spatial scales. Our findings suggest that preserving grassland functional stability requires conservation of plant diversity within and among ecological communities.},
	issn = {2041-1723},
	doi = {10.1038/s41467-020-19252-4},
	url = {https://www.nature.com/articles/s41467-020-19252-4},
	author = {Hautier, Yann and Zhang, Pengfei and Loreau, Michel and Wilcox, Kevin R. and Seabloom, Eric W. and Borer, Elizabeth T. and Byrnes, Jarrett E. K. and Koerner, Sally E. and Komatsu, Kimberly J. and Lefcheck, Jonathan S. and Hector, Andy and Adler, Peter B. and Alberti, Juan and Arnillas, Carlos A. and Bakker, Jonathan D. and Brudvig, Lars A. and Bugalho, Miguel N. and Cadotte, Marc and Caldeira, Maria C. and Carroll, Oliver and Crawley, Mick and Collins, Scott L. and Daleo, Pedro and Dee, Laura E. and Eisenhauer, Nico and Eskelinen, Anu and Fay, Philip A. and Gilbert, Benjamin and Hansar, Amandine and Isbell, Forest and Knops, Johannes M. H. and MacDougall, Andrew S. and McCulley, Rebecca L. and Moore, Joslin L. and Morgan, John W. and Mori, Akira S. and Peri, Pablo L. and Pos, Edwin T. and Power, Sally A. and Price, Jodi N. and Reich, Peter B. and Risch, Anita C. and Roscher, Christiane and Sankaran, Mahesh and Sch{\"u}tz, Martin and Smith, Melinda and Stevens, Carly and Tognetti, Pedro M. and Virtanen, Risto and Wardle, Glenda M. and Wilfahrt, Peter A. and Wang, Shaopeng}
}
@article {8667,
	title = {maxEntropyProd/MEP-AutoHetDet: Release of Fortran code associated with paper},
	year = {2020},
	publisher = {Zenodo},
	type = {Software},
	edition = {4.7},
	keywords = {heterotrophy, maximum entropy production, modelling},
	doi = {10.5281/zenodo.3979922},
	url = {https://zenodo.org/record/3979922$\#$.YjHsEDUpBaQ},
	author = {VAllini, J.J.}
}
@article {8668,
	title = {maxEntropyProd/MEP-AutoHetDet: Release of Fortran code associated with paper},
	year = {2020},
	publisher = {Zenodo},
	type = {Software},
	edition = {4.7},
	keywords = {maximum entropy production, heterotrophy, modelling},
	doi = {10.5281/zenodo.3979922},
	url = {https://github.com/maxEntropyProd/MEP-AutoHetDet},
	author = {Vallino, J.J.}
}
@article {8666,
	title = {maxEntropyProd/MEP-SidersPond: Release of Fortran code associated with published paper},
	year = {2020},
	publisher = {Zenodo},
	type = {Software},
	edition = { v1.5.9},
	keywords = {biogeochemistry, maximum entropy production, microbes, modelling, pond},
	doi = {10.5281/zenodo.3978698},
	url = {https://github.com/maxEntropyProd/MEP-SidersPond},
	author = {Vallino, J.J.}
}
@article {bulseco_metagenomics_2020,
	title = {Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments},
	journal = {Limnology and Oceanography},
	volume = {65},
	number = {S1},
	year = {2020},
	month = {jan},
	issn = {0024-3590, 1939-5590},
	doi = {10.1002/lno.11326},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/lno.11326},
	author = {Bulseco, Ashley N. and Vineis, Joseph H. and Murphy, Anna E. and Spivak, Amanda C. and Giblin, Anne E. and Tucker, Jane and Bowen, Jennifer L.}
}
@article {vallino_phytoplankton_2020,
	title = {Phytoplankton {Temporal} {Strategies} {Increase} {Entropy} {Production} in a {Marine} {Food} {Web} {Model}},
	journal = {Entropy},
	volume = {22},
	number = {11},
	year = {2020},
	month = {nov},
	pages = {1249},
	abstract = {We develop a trait-based model founded on the hypothesis that biological systems evolve and organize to maximize entropy production by dissipating chemical and electromagnetic free energy over longer time scales than abiotic processes by implementing temporal strategies. A marine food web consisting of phytoplankton, bacteria, and consumer functional groups is used to explore how temporal strategies, or the lack thereof, change entropy production in a shallow pond that receives a continuous flow of reduced organic carbon plus inorganic nitrogen and illumination from solar radiation with diel and seasonal dynamics. Results show that a temporal strategy that employs an explicit circadian clock produces more entropy than a passive strategy that uses internal carbon storage or a balanced growth strategy that requires phytoplankton to grow with fixed stoichiometry. When the community is forced to operate at high specific growth rates near 2 d-1, the optimization-guided model selects for phytoplankton ecotypes that exhibit complementary for winter versus summer environmental conditions to increase entropy production. We also present a new type of trait-based modeling where trait values are determined by maximizing entropy production rather than by random selection.},
	issn = {1099-4300},
	doi = {10.3390/e22111249},
	url = {https://www.mdpi.com/1099-4300/22/11/1249},
	author = {Vallino, Joseph J. and Tsakalakis, Ioannis}
}
@article {PIE488,
	title = {Tidal Wetland Gross Primary Production Across the Continental United States, 2000{\textendash}2019.},
	journal = {Global Biogeochemical Cycles},
	volume = {34},
	year = {2020},
	note = {PI},
	keywords = {blue carbon, eddy covariance, LTER-PIE, organic matter, primary production, tidal wetlands},
	doi = {10.1029/2019GB006349},
	author = {Feagin, A. and Forbrich, I. and Huff, T.P. and Barr, J. G. and Ruiz-Plancarte, J. and Fuentes, J. D. and NaJJar, R. G. and Vargas, R. and V{\'a}zquez-Lule, A. and Windham-Myers. L. and Kroeger, K. D. and Ward, E. J. and Moore, G. W. and Leclerc, M. and Krauss, K. W. and Stagg, C. L. and Alber, M. and Knox, S. H. and Sch{\"a}fer, K.V.R. and Bianchi, T. S. and Hutchings, J. A. and Nahrawi, H. and Noormets, A. and Mitra, B. and Jaimes, A. and Hinson, A. L. and Bergamaschi, B. and King, J. S. and Miao, G.}
}
@article {PIE472,
	title = {Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents},
	journal = {ISME},
	year = {2019},
	note = {PI},
	keywords = {flow path geometry, LTER-PIE, methanogens, microbial communities, population dynamics},
	doi = {10.1038/s41396-019-0382-3},
	author = {Stewart, L.C. and Algar, C.K. and Fortunato, C.S. and Larson, B.I. and Vallino, J.J. and Huber, J.A. and Butterfield, D.A. and Holden, J.F.}
}
@article {PIE465,
	title = {Intensity Analysis and the Figure of Merit{\textquoteright}s components for assessment of a Cellular Automata {\textendash} Markov simulation model},
	journal = {Ecological Indicators},
	year = {2019},
	note = {PI},
	keywords = {CA-Markov, cellular-automata, figure of merit, intensity analysis, land change, LTER-PIE, Validation},
	doi = {10.1016/j.ecolind.2019.01.057},
	author = {Varga, O.G. and Pontius, R.G., Jr. and Singh, S.K. and Szabo, S.}
}
@article {PIE484,
	title = {Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments.},
	journal = {Limnology and Oceanography},
	volume = {65},
	year = {2019},
	note = {PI},
	keywords = {denitrification, dissolved inorganic carbon, flow through reactor, inorganic nutrients, LTER-PIE, nitrate addition, population dynamics, salt marsh, shotgun metagenomics},
	doi = {10.1002/lno.11326},
	author = {Bulseco, A.N. and Vineis, J.H. and Murphy, A.E. and Spivak, A.C. and Giblin, A.E. and Tucker, J. and Bowen, J.L.}
}
@article {bortolus_supporting_2019,
	title = {Supporting \textit{{Spartina}} : {Interdisciplinary} perspective shows \textit{{Spartina}} as a distinct solid genus},
	journal = {Ecology},
	volume = {100},
	number = {11},
	year = {2019},
	issn = {0012-9658, 1939-9170},
	doi = {10.1002/ecy.2863},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/ecy.2863},
	author = {Bortolus, Alejandro and Adam, Paul and Adams, Janine B. and Ainouche, Malika L. and Ayres, Debra and Bertness, Mark D. and Bouma, Tjeerd J. and Bruno, John F. and Ca{\c c}ador, Isabel and Carlton, James T. and Castillo, Jesus M. and Costa, Cesar S. B. and Davy, Anthony J. and Deegan, Linda and Duarte, Bernardo and Figueroa, Enrique and Gerwein, Joel and Gray, Alan J. and Grosholz, Edwin D. and Hacker, Sally D. and Hughes, A. Randall and Mateos-Naranjo, Enrique and Mendelssohn, Irving A. and Morris, James T. and Mu{\~n}oz-Rodr{\'\i}guez, Adolfo F. and Nieva, Francisco J. J. and Levin, Lisa A. and Li, Bo and Liu, Wenwen and Pennings, Steven C. and Pickart, Andrea and Redondo-G{\'o}mez, Susana and Richardson, David M. and Salmon, Armel and Schwindt, Evangelina and Silliman, Brian R. and Sotka, Erik E. and Stace, Clive and Sytsma, Mark and Temmerman, Stijn and Turner, R. Eugene and Valiela, Ivan and Weinstein, Michael P. and Weis, Judith S.}
}
@article {PIE480,
	title = {River network saturation concept: factors influencing the balance of biogeochemical supply and demand of river networks},
	journal = {Biogeochemistry},
	year = {2018},
	note = {PI Synthesis},
	keywords = {demand, dissolved, flow regime, fluxes, gases, inorganic nitrogen, LTER-PIE, macrosystems, modeling, removal, retention, river network, saturation, sediment, sensors, supply},
	doi = {10.1007/s10533-018-0488-0},
	author = {Wollheim, W.M. and Bernal, S. and Burns, D.A. and Czuba, J.A. and Driscoll, C.T. and Hansen, A.T. and Hensley, R.T. and Hosen, J.D. and Inamdar, S. and Kaushal, S.S. and Koenig, L.E. and Lu, Y.H. and Marzadri, A. and Raymond, P.A. and Scott, D. and Stewart, R.J. and Vidon, P.G. and Wohl, E.}
}
@article {PIE473,
	title = {Using Maximum Entropy Production to Describe Microbial Biogeochemistry Over Time and Space in a Meromictic Pond},
	journal = {Frontiers in Environmental Science},
	year = {2018},
	note = {PI},
	keywords = {community function, inorganic nitrogen, LTER-PIE, maximum entropy production, meromictic, metabolic net works, microbial biogepchemustry, phototrophy},
	doi = {10.3389/fenvs.2018.00100},
	author = {Vallino, J.J. and Huber, J.A.}
}
@article {PIE435,
	title = {The effect of evaporation on the erodibility of mudflats in a mesotidal estuary},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {194},
	year = {2017},
	note = {PI Plum Data},
	pages = {118-127},
	keywords = {disturbance, erosion, estuaries, LTER-PIE, mudflats, tidal energy},
	doi = {10.1016/j.ecss.2017.06.011},
	author = {Fagherazzi, S. and Viggato, T. and Vieillard, A.M. and Mariotti, G. and Fulweiler, R.W.}
}
@article {PIE402,
	title = {Thermodynamics of Marine Biogeochemical Cycles: Lotka Revisited},
	journal = {Annual Review of Marine Science},
	volume = {8},
	year = {2016},
	note = {PI Plum Data},
	pages = {333-356},
	keywords = {biogeochemistry, entropy, LTER-PIE, maximum entropy production, MEP},
	doi = {10.1146/annurev-marine-010814-015843},
	author = {Vallino, J.J. and Algar, C.K.}
}
@article {PIE401,
	title = {Ecosystem{\textquoteright}s 80th and the Reemergence of Emergence},
	journal = {Ecosystems},
	volume = {18},
	number = {5},
	year = {2015},
	note = {PI Synthesis},
	pages = {735-739},
	keywords = {ecosystem, emergence, LTER-PIE},
	doi = {10.1007/s10021-015-9893-6},
	author = {Rastetter, E. and Vallino, J.}
}
@article {PIE395,
	title = {<i>Ulva</i> additions alter soil biogeochemistry and negatively impact Spartina alterniflora growth},
	journal = {Marine Ecological Progress Series},
	volume = {532},
	year = {2015},
	note = {PI},
	pages = {59-72},
	keywords = {allelochemicals, allelopathy, disturbance, eutrophic estuary, LTER-PIE, primary production, salt marsh, salt marsh loss},
	doi = {10.3354/meps11334},
	author = {Watson, E.B. and Wigand, C. and Oczkowski, A.J. and Sundberg, K. and Vendettuoli, D. and Jayaraman, S. and Saliba, K. and Morris, J.T.}
}
@article {PIE382,
	title = {Time-dependent behavior of a placed bed of cohesive sediment subjected to erosion and deposition cycles},
	journal = {Ocean Dynamics},
	volume = {65},
	number = {2},
	year = {2015},
	note = {Grad},
	pages = {287-294},
	keywords = {cycles, disturbance, erodibility, flocculation, long-term, LTER-PIE, mud},
	doi = {10.1007/s10236-014-0798-2},
	author = {Mariotti, G. and Valentine, K. and Fagherazzi, S.}
}
@article {PIE368,
	title = {Animating the Carbon Cycle},
	journal = {Ecosystems},
	volume = {17},
	number = {2},
	year = {2014},
	note = {PI Synthesis},
	pages = {344-359},
	keywords = {animal management, animal mediation, biogeochemical cycling, carbon budgets, carbon cycling, LTER-PIE, organic matter, population dynamics},
	doi = {10.1007/s10021-013-9715-7},
	author = {Schmitz, O.J. and Raymond, P. A. and Estes, J.A. and Kurz, W.A. and Holtgrieve, G.W. and Ritchie, M.E. and Schindler, D.E. and Spivak, A.C. and Wilson, R.W. and Bradford, M.A. and Christensen, V. and Deegan, L. and Smetacek, V. and Vanni, M.J. and Wilmers, C.C.}
}
@article {PIE345,
	title = {Predicting microbial nitrate reduction pathways in coastal sediments},
	journal = {Aquatic Microbial Ecology},
	volume = {71},
	year = {2014},
	note = {PI Plum Data},
	pages = {223-238},
	keywords = {coastal sediments, estuaries, inorganic nutrients, LTER-PIE, microbes, nitrate reduction},
	doi = {10.3354/ame01678},
	author = {Algar, C.K. and Vallino, J.J.}
}
@article {PIE365,
	title = {Repeated erosion of cohesive sediments with biofilms},
	journal = {Advances in Geosciences},
	volume = {39},
	year = {2014},
	note = {PI Plum Data},
	pages = {9-14},
	keywords = {biofilms, disturbance, LTER-PIE, sediment erosion, tidal flat},
	doi = {10.5194/adgeo-39-9-2014},
	author = {Valentine, K. and Mariotti, G. and Fagherazzi, S.}
}
@article {PIE369,
	title = {Saltmarsh pool and tidal creek morphodynamics: Dynamic equilibrium of northern latitude saltmarshes?},
	journal = {Geomorphology},
	year = {2014},
	note = {PI Plum Data},
	pages = {99-115},
	keywords = {anthropogenic alteration, disturbance, LTER-PIE, saltmarsh ditches, saltmarsh pools, sea-level, tidal creeks, vertical accretion},
	doi = {10.1016/j.geomorph.2014.01.002},
	author = {Wilson, C.A. and Hughes, Z.J. and FitzGerald, D.M. and Hopkinson, C.S. and Valentine, V. and Kolker, A.S.}
}
@inbook {PIE327,
	title = {Use of receding horizon optimal control to solve MaxEP-based biogeochemistry problems},
	booktitle = {Beyond the Second Law: Entropy Production and Non-Equilibrium Systems},
	year = {2014},
	note = {PI Plum Data},
	pages = {337-359},
	publisher = {Springer},
	organization = {Springer},
	keywords = {complex systems, complexity, disturbance, entropy production, inorganic nutrients, LTER-PIE, non-equilibrium systems, organic matter, population dynamics},
	doi = {10.1007/978-3-642-40154-1_18.},
	author = {Vallino, J.J. and Algar, C.K. and Fernandez Gonzales, N. and Huber, J.A.},
	editor = {Dewar, R.C. and Lineweaver, C.H. and Niven, R.K. and Regenauer-Lieb, K.}
}
@thesis {PIE400,
	title = {The Effect of Physical and Biological Processes on the erosion of Cohesive Sediments},
	volume = {B.S.},
	year = {2013},
	note = {Undergrad},
	school = {Boston University},
	type = {bachelorsthesis},
	address = {Boston, MA},
	keywords = {disturbance, erosion, LTER-PIE, salt marsh, sediments},
	author = {Valentine, K.}
}
@article {,
	title = {History of nutrient inputs to the Northeastern United States, 1930-2000.},
	journal = {Global Biogeochemical Cycles},
	volume = {27},
	number = {2},
	year = {2013},
	note = {PI Data},
	pages = {578-591},
	keywords = {anthropogenic, disturbance, inorganic nutrients, LTER-PIE, Northeast United States, nutrient inputs},
	doi = {10.1002/gbc.20049},
	author = {Hale, R.L. and Hoover, J.H. and Wollheim, W.M. and Vorosmarty, C.J.}
}
@inbook {PIE303,
	title = {Assessment of Carbon Sequestration Potential in Coastal Wetlands.},
	booktitle = {Recarbonization of the Bioshpere: Ecosystem and Global Carbon Cycle. },
	year = {2012},
	note = {PI Plum Data},
	pages = {517-531},
	publisher = {Springer},
	organization = {Springer},
	keywords = {anthropogenic disturbance, autochthonous, carbon sequestration, carbon stocks, coastal ecosystems, coastal wetlands, digital elevation model, diking, disturbance, drainage, holocene, LTER-PIE, mangroves, marsh equilibrium model, organic matter, organic rich soil, primary production, sea level rise, subsidence, suspended solids, tidal amplitude, tidal marshes, tide range},
	doi = {10.1007/978-94-007-4159-1_24},
	author = {Morris, J.T. and Edwards, J. and Crooks, S. and Reyes, E.},
	editor = {Lal, R. and Lorenz, K. and H{\"u}ttl, R. and Schneider, B.U. and von Braun, J.}
}
@article {PIE323,
	title = {Impacts of long-term fertilization on salt marsh tidal creek benthic nutrient and N2 gas fluxes},
	journal = {Marine Ecological Progress Series},
	volume = {471},
	year = {2012},
	note = {Grad},
	pages = {11-22},
	keywords = {denitrification, DNRA, fertilization, inorganic nutrients, LTER-PIE, nitrogen loading, salt marsh ecosystem},
	doi = {10.3354/meps10013},
	author = {Vieillard, A.M. and Fulweiler, R.W.}
}
@article {PIE299,
	title = {Legacy effects material flux: structural catchment changes predate long-term studies.},
	journal = {Bioscience},
	volume = {62},
	number = {6},
	year = {2012},
	note = {PI Plum Data},
	pages = {575-584},
	keywords = {inorganic nutrients, legacy effect, long-term studies, LTER-PIE, sedimentation, streams, structural and signal legacy effects},
	doi = {10.1525/bio.2012.62.6.8},
	author = {Bain, D. and Green, M.B. and Campbell, J. and Chamblee, J. and Fraterrigo, J. and Kaushal, S.S. and Martin, S. and Jordan, T. and Parolari, A. and Sobczak, W.V. and Weller, D.E. and Wollheim, W.M. and Boose, E. and Duncan, J. and Gettel, G. and Hall, B. and Kumar, P. and Thompson, J. and Vose, J. and Elliott, E. and Leigh, D.}
}
@article {PIE298,
	title = {Local scale carbon budgets and mitigation opportunities for the Northeastern United States.},
	journal = {BioScience},
	volume = {62},
	year = {2012},
	note = {PI Plum Data},
	pages = {23-38},
	keywords = {carbon, climate change, disturbance, energy, land use, LTER-PIE},
	doi = {10.1525/bio.2012.62.1.7},
	author = {Raciti, S. and Fahey, T. and Hall, B. and Driscoll, C. and Carranti, F.J. and Foster, D. and Gwyther, P.S. and Jenkins, J. and Hamburg, S. and Neill, C. and Ollinger, S. and Peery, B.W. and Quigley, E. and Sherman, R. and Thomas, R.Q. and Vadeboncoeur, T.M. and Weinstein, D. and Wilson, G. and Woodbury, P. and Yandik, W.}
}
@article {PIE285,
	title = {Differences and implications in biogeochemistry from maximizing entropy production locally versus globally},
	journal = {Earth System Dynamics},
	volume = {2},
	year = {2011},
	note = {PI Plum Data},
	pages = {69-85},
	keywords = {dissipative systems, disturbance, evolution, free energy, information, inorganic nutrients, living systems, LTER-PIE, organic matter, population dynamics, self-organization},
	doi = {10.5194/esd-2-69-2011},
	author = {Vallino, J.J.}
}
@article {PIE283,
	title = {The ebb and flood of silica: Quantifying dissolved and biogenic silica fluxes from a temperate salt marsh},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {95},
	year = {2011},
	note = {Collab Plum Data},
	pages = {415-423},
	keywords = {biogenic silica, diatoms, dissolved silica, inorganic nutrients, LTER-PIE, nutrient cycles, primary production, salt marshes},
	doi = {10.1016/j.ecss.2011.10.012},
	author = {Vieillard, A., and R.W. Fulweiler, R.W. and Hughes, Z. and Carey, J.}
}
@article {PIE286,
	title = {Metapopulation structure of <i>Vibrionaceae</i> among coastal marine invertebrates},
	journal = {Environmental Microbiology},
	volume = {13},
	year = {2011},
	note = {Collab},
	pages = {265-275},
	keywords = {genome, LTER-PIE, marine invertebrates, microbes, population dynamics, vibrios},
	doi = {10.1111/j.1462-2920.2010.02328.x},
	author = {Preheim, S.P. and Boucher, Y. and Woldschutte, H. and David, L.A. and Veneziano, D. and Alm, E.J. and Polz, M.F.}
}
@article {PIE267,
	title = {Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment},
	journal = {The ISME Journal},
	volume = {5},
	year = {2011},
	note = {PI Plum Data},
	pages = {1540-1548},
	keywords = {denitrification, disturbance, estuaries, eutrophication, inorganic nitrogen, LTER-PIE, microbes, nirS, population dynamics, resistance, salt marsh},
	doi = {10.1038/ismej.2011.22},
	author = {Bowen, J.L. and Ward, B.B. and Morrison, H.G. and Hobbie, J.E. and Valiela, I. and Deegan, L.A. and Sogin, M.L.}
}
@article {,
	title = {Nitrous oxide emission from denitrification in stream and river networks},
	journal = {Proceedings of the National Academy of Science},
	volume = {108},
	year = {2011},
	note = {PI Plum Data},
	pages = {214-219},
	keywords = {inorganic nitrogen, LTER-PIE, nitrous oxide, streams},
	doi = {210.1073/pnas.1011464108},
	author = {Beaulieu, J. J. and Tank, J.L. and Hamilton, S. K. and Wollheim, W. and Hall, R. and Mulholland, P. and Peterson, B. and Ashkenas, L. and Cooper, L. and Dahm, C. and Dodds, W. and Grimm, N. and Johnson, S. and McDowell, W. and Poole, G. and Valett, H. and Arango, C. and Bernot, M. and Burgin, A. and Crenshaw, C. and Helton, A. and Johnson, L. and O{\textquoteright}Brien, J. and Potter, J. and Sheibley, D. and Sobota, D. and Thomas, S.}
}
@article {PIE272,
	title = {Thinking outside the channel: Modeling nitrogen cycling in networked river ecosystems},
	journal = {Frontiers in Ecology and Environment},
	volume = {9},
	year = {2011},
	note = {PI Plum Data},
	pages = {229-238},
	keywords = {inorganic nitrogen, LTER-PIE, nitrogen cycling modeling, rivers},
	doi = {10.1890/080211},
	author = {Helton, A.M. and Poole, G.C. and Meyer, J.L. and Wollheim, W.M. and Peterson, B.J. and Mulholland, P.J. and Bernhardt, E.S. and Stanford, J.A. and Arango, C. and Ashkenas, L.R. and Cooper, L.W. and Dodds, W.K. and Gregory, S.V. and Hall, R.O. and Hamilton, S.K. and Johnson, S.L. and McDowell, W.H. and Potter, J.D. and Tank, J.L. and Thomas, S.M. and Valett, H.M. and Webster, J.R. and Zeglin, L.}
}
@mastersthesis {PIE291,
	title = {Drivers of Residential Lawn Care in Suburban Massachusetts: A Quantitative and Qualitative Analysis of Four Massachusetts Towns},
	year = {2010},
	note = {Grad},
	school = {Tufts University},
	type = {mastersthesis},
	address = {Medford},
	keywords = {disturbance, land use, lawns, LTER-PIE, primary production, suburbia},
	author = {von Trapp, K.}
}
@article {PIE227,
	title = {Ecosystem biogeochemistry considered as a distributed metabolic network ordered by maximum entropy production.},
	journal = {Philosophical Transactions of The Royal Society B},
	volume = {365},
	year = {2010},
	note = {PI Plum Data},
	pages = {1417-1427},
	keywords = {disturbance, entropy, inorganic nutrients, LTER-PIE, metabolism, organic matter, population dynamics},
	doi = {10.1098/rstb.2009.0272},
	author = {Vallino, J.J.}
}
@article {PIE257,
	title = {Salt marsh geomorphological analyses via integration of multi-temporal multispectral remote sensing with LIDAR and GIS.},
	journal = {Journal of Coastal Research},
	volume = {26},
	year = {2010},
	note = {PI Plum Data},
	pages = {809-816},
	keywords = {disturbance, ecogeomorphology, geomophology, geoprocessing, GIS, LiDAR, LTER-PIE, New England, organic matter, remote sensing, salt marsh},
	doi = {10.2112/JCOASTRES-D-09-00101.1},
	author = {Millette, T.L. and Argow, B. and Marcano, E. and Hayward, C. and Hopkinson, C. and Valentine, V.}
}
@article {PIE264,
	title = {Wetland-estuarine-shelf interactions in the Plum Island Sound and Merrimack River in the Massachusetts coast},
	journal = {Journal of Geophysical Research},
	volume = {115},
	number = {C10(C10039))},
	year = {2010},
	note = {PD Plum Data; PI Plum Data},
	pages = {1-13},
	keywords = {disturbance, estuaries, hydrodynamics, LTER-PIE},
	doi = {10.1029/2009JC006085},
	author = {Zhao, L. and Chen, C. and Vallino, J. and Hopkinson, C. and Beardsley, R.C. and Lin, H. and Lerczak, J.}
}
@article {PIE176,
	title = {The biogeochemical influences of nitrate, dissolved oxygen, and dissolved organic carbon on stream nitrate uptake.},
	journal = {Journal of the North American Benthological Society},
	volume = {28},
	number = {4},
	year = {2009},
	note = {Grad},
	pages = {894-907},
	keywords = {dissolved organic carbon, dissolved oxygen, inorganic nutrients, LTER-PIE, net nutrient uptake, nitrate, nitrate uptake, organic matter, priming effect, solute addition},
	doi = {10.1899/08-183.1},
	author = {Thouin, J.A. and Wollheim, W.M. and Vorosmarty, C.J. and Jacobs, J. and McDowell, W.H.}
}
@article {PIE235,
	title = {The Long-Term Ecological Research community metadata standardisation project: a progress report.},
	journal = {International Journal of Metadata, Semantics and Ontologies},
	volume = {4},
	number = {3},
	year = {2009},
	note = {Collab Plum Data},
	pages = {141-153},
	keywords = {ecological metadata language, EML, LTER-IMC, LTER-PIE, metadata, metadata management, standardisation},
	doi = {10.1504/IJMSO.2009.027750},
	author = {San Gil, I. and Baker, K. and Campbell, J. and Denny, E.G. and Vanderbilt, K. and Riordan, B. and Koskela, R. and Downing, J. and Grabner, S. and Melendez, E. and Walsh, J.M. and Kortz, M. and Conners, J. and Yarmey, L. and Kaplan, N. and Boose, E.R. and Powell, L. and Gries, C. and Schroeder, R. and Ackerman, T. and Ramsey, K. and Benson, B. and Chipman, J. and Laundre, J. and Garritt, H. and Henshaw, D. and Collins, B. and Gardner, C. and Bohm, S. and O{\textquoteright}Brien, M. and Gao, J. and Sheldon, W. and Lyon, S. and Bahauddin, D. and Servilla, M. and Costa, D. and Brunt, J.}
}
@article {PIE184,
	title = {Dynamics of N removal over annual time scales in a suburban river network},
	journal = {Journal of Geophysical Research-Biogeosciences},
	volume = {113},
	year = {2008},
	note = {PI Plum Data},
	keywords = {disturbance, inorganic nutrients, LTER-PIE, nitrogen removal, watershed},
	doi = {10.1029/2007JG000660},
	author = {Wollheim, W.M. and Peterson, B.J. and Vorosmarty, C. and Hopkinson, C. and Thomas, S.A.}
}
@article {PIE180,
	title = {Global N removal by freshwater aquatic systems A spatially distributed, within-basin approach},
	journal = {Global Biogeochemical Cycles},
	volume = {22},
	year = {2008},
	note = {PI Plum Data},
	keywords = {disturbance, inorganic nitrogen, LTER-PIE, nitrogen removal, watershed},
	doi = {10.1029/2007GB002963},
	author = {Wollheim, W.M. and Vorosmarty, C.J. and Bouwman, A.F. and Green, P.A. and Harrison, J. and Linder, E. and Peterson, B.J. and Green, P.A. and Seitzinger, S. and Syvitski, J.P.M.}
}
@article {PIE190,
	title = {Stream denitrification across biomes and its response to anthropogenic nitrate loading},
	journal = {Nature},
	volume = {452},
	year = {2008},
	note = {PI Plum Data},
	pages = {202-206},
	keywords = {denitrification, disturbance, inorganic nutrients, LTER-PIE, nitrogen, nitrogen isotopes, stream network},
	doi = {10.1038/nature06686},
	author = {Mulholland, P. J. and Helton, A. M. and Poole, G.C. and Hall, Jr., R.O. and Hamilton, S. K. and Peterson, B. J. and Tank, J.L. and Ashkenas, L.R. and Cooper, L. W. and Dahm, C. N. and Dodds, W. K. and Findlay, S. E. G. and Gregory, S. V. and Grimm, N.B. and Johnson, S. L. and McDowell, W.H. and Meyer, J. L. and Valett, H. M. and Webster, J. R. and Arango, C. P. and Beaulieu, J. J. and Bernot, M. J. and Burgin, A. J. and Crenshaw, C. L. and Johnson, L.T. and Niederlehner, B. R. and OﾒBrien, J. M. and Potter, J. D. and Sheibley, R.W. and Sobota, D. J. and Thomas, S. M.}
}
@article {PIE179,
	title = {Understanding and forecasting the effects of sea level rise and intense windstorms on coastal and upland ecosystems: the need for a continental-scale netowrk of observatories},
	journal = {Frontiers in Ecology and Environment},
	volume = {6},
	number = {5},
	year = {2008},
	note = {PI Synthesis},
	pages = {255-263},
	keywords = {climate change, disturbance, ecosystem services, land use, LTER-PIE, population dynamics, sea-level},
	doi = {10.1890/070153},
	author = {Hopkinson, C.S. and Lugo, A.E. and Alber, M. and Covich, A. and van Bloem, S.}
}
@article {PIE168,
	title = {The application of electrical conductivity as a tracer for hydrograph separation in urban catchments.},
	journal = {Hydrological Processes},
	volume = {22},
	year = {2007},
	note = {PI Plum Data},
	pages = {1810-1818},
	keywords = {disturbance, electrical conductivity, hydrograph separation, impervious, LTER-PIE, urbanization},
	doi = {10.1002/hyp.6786},
	author = {Pellerin, B.A. and Wollheim, W.M. and Feng, X. and Vorosmarty, C.J.}
}
@article {PIE236,
	title = {Susceptibility of salt marshes to nutrient enrichment and predator removal},
	journal = {Ecological Applications},
	volume = {17},
	number = {5},
	year = {2007},
	note = {PI Plum Data},
	pages = {S-42-S63},
	keywords = {bottom-up, disturbance, eutrophication, Fundulus heteroclitus, inorganic nutrients, LTER-PIE, multiple stressors, nutrient loading, organic matter, population dynamics, primary production, salt marsh, Spartina alterniflora, Spartina patens, species change, top-down control},
	doi = {10.1890/06-0452.1},
	author = {Deegan, L.A. and Bowen, J.L. and Drake, D.C. and Fleeger, J.W. and Friedrichs, C.T. and Galv{\'a}n, K.A. and Hobbie, J.E. and Hopkinson, C. and Johnson, D.S. and Johnson, J.M. and Lemay, L.E. and Miller, E.E. and Peterson, B.J. and Picard, C. and Sheldon, S. and Sutherland, M. and Vallino, J. and Warren, R.S.}
}
@article {PIE232,
	title = {Effect of historical changes in land use and climate on the water budget of an urbanizing watershed},
	journal = {Water Resources Research},
	volume = {42},
	year = {2006},
	note = {PI Plum Data},
	keywords = {climate change, disturbance, hydrology, land use, LTER-PIE, population dynamics, watershed},
	doi = {10.1029/2005WR004131},
	author = {Claessens, L. and Hopkinson, C. and Rastetter, E. and Vallino, J.}
}
@article {PIE165,
	title = {Relationship between river size and nutrient removal.},
	journal = {Geophysical Research Letters},
	volume = {33},
	year = {2006},
	note = {PI Plum Data},
	keywords = {hydrology, inorganic nutrients, LTER-PIE, nutrient removal},
	doi = {10.1029/2006GL025845},
	author = {Wollheim, W.M. and Vorosmarty, C.J. and Peterson, B.J. and Seitzinger, S.P. and Hopkinson, C.S.}
}
@article {PIE162,
	title = {The role of snowmelt and spring rainfall in inorganic nutrient fluxes from a large temperate watershed, the Androscoggin River basin (Maine and New Hampshire).},
	journal = {Biogeochemistry},
	volume = {80},
	year = {2006},
	note = {PI Coastal},
	pages = {217-234},
	keywords = {Androscoggin River, DIN, Freshet, LTER-PIE, nitrogen, nutrient, Snowmelt, Snowpack, watershed},
	doi = {10.1007/s10533-006-9017-7},
	author = {Oczkowski, A.J. and Pellerin, B.A. and Hunt, C.W. and Wollheim, W.M. and Vorosmarty, C.J. and Loder, T.C.}
}
@article {PIE171,
	title = {Salt marsh geomorphology: Physical and ecological effects on landform},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {69},
	year = {2006},
	note = {PI Plum Data},
	pages = {309-310},
	keywords = {disturbance, geomorphology, LTER-PIE, salt marsh},
	doi = {10.1016/j.ecss.2006.05.001},
	author = {Torres, R. and Fagherazzi, S. and van Proosdij, D. and Hopkinson, C.}
}
@article {PIE163,
	title = {Visualizing certainty of extrapolations from models of land change.},
	journal = {Landscape Ecology},
	volume = {21},
	year = {2006},
	note = {PI Plum Data},
	pages = {1151-1166},
	keywords = {accuracy, calibration, disturbance, error, land cover, LTER-PIE, map, Massachusetts, prediction, uncertainty, Validation},
	doi = {10.1007/s10980-006-7285-1},
	author = {Pontius, R.G., Jr. and Versluis, A.J. and Malizia, N.R.}
}
@proceedings {PIE151,
	title = {Effects of changes in sea level and productivity on the stability of intertidal marshes.},
	journal = {UNESCO Proceeding Series on Lagoons and Coastal Wetlands in the Global Change Context: Impact and Management Issues},
	year = {2005},
	note = {PI Plum Data},
	month = {April 26-28, 2004},
	pages = {121-127},
	address = {Venice},
	keywords = {LTER-PIE, productivity, salt marsh, sea level, wetlands},
	author = {Morris, J.T.},
	editor = {Lasserre, P. and Viaroli, P. and Campostrini P.}
}
@article {PIE141,
	title = {Efficient export of carbon to the deep ocean through dissolved organic matter.},
	journal = {Nature},
	volume = {433},
	year = {2005},
	note = {PI Coastal},
	pages = {142-145},
	keywords = {carbon, dissolved organic matter, marine, LTER-PIE},
	doi = {10.1038/nature03191},
	author = {Hopkinson, C.S. and Vallino, J.}
}
@article {PIE154,
	title = {Estimating estuarine gross production, community respiration and net ecosystem production: A nonlinear inverse technique.},
	journal = {Ecological Modeling},
	volume = {187},
	year = {2005},
	note = {PI Plum Data},
	pages = {281-296},
	keywords = {community respiration, dissolved oxygen, estuarine metabolism, gross primary production, inverse modeling, LTER, LTER-PIE, primary production},
	doi = {10.1016/j.ecolmodel.2004.10.018},
	author = {Vallino, J. and Hopkinson, C.S. and Garritt, R.H.}
}
@article {PIE142,
	title = {Fluvial filtering of land to ocean fluxes: from Holocene variations to Anthrocene.},
	journal = {Compte Rendus},
	volume = {337},
	year = {2005},
	note = {PI Coastal},
	pages = {107-123},
	keywords = {fluvial, inorganic nutrients, land to ocean flux, LTER-PIE, watershed},
	doi = {10.1016/j.crte.2004.09.016},
	author = {Meybeck, M. and Vorosmarty, C.J.}
}
@article {PIE155,
	title = {An inverse ecosystem model of year-to-year variations with first order approximation to the annual mean fluxes.},
	journal = {Ecological Modeling},
	volume = {187},
	year = {2005},
	note = {PD Plum Data},
	pages = {369-388},
	keywords = {Ecosystem modeling, First order approximation, Flux analysis, Inverse model, LTER-PIE, Time scale separation},
	doi = {10.1016/j.ecolmodel.2005.02.003},
	author = {Wan, Z. and Vallino, J.}
}
@article {PIE156,
	title = {N retention in urbanizing headwater catchments},
	journal = {Ecosystems},
	volume = {8},
	year = {2005},
	note = {PI Plum Data},
	pages = {871-884},
	keywords = {export, impervious, inorganic nutrients, loading, LTER-PIE, nitrogen, residential, retention, urban, watershed},
	doi = {10.1007/s10021-005-0178-3},
	author = {Wollheim, W. and Pellerin, B. and Vorosmarty, C. and Hopkinson, C.}
}
@article {PIE146,
	title = {Relationships of land use and streamwater solute concentrations in the Ipswich River basin, northeastern Massachusetts.},
	journal = {Water, Air, and Soil Pollution},
	volume = {161},
	year = {2005},
	note = {PD Plum Data},
	keywords = {land cover, land use, LTER-PIE, solute concentration, urbanization, watershed},
	doi = {10.1007/s11270-005-2830-0},
	author = {Williams, M. and Hopkinson, C. and Rastetter, E. and Vallino, J. and Claussens, L.}
}
@conference {PIE187,
	title = {Visualizing the certainty for extrapolations from models of landscape change},
	booktitle = {Conference proceedings of the meeting of Geocomputation},
	year = {2005},
	note = {PI Plum Data},
	pages = {6},
	address = {Ann Arbor, MI. USA},
	keywords = {disturbance, land use change, LTER-PIE},
	author = {Pontius, R.G., Jr. and Versluis, A.J. and Malizia, N.R.}
}
@article {PIE122,
	title = {Modeling Nitrogen Transport in the Ipswich River Basin, Massachusetts, Using HSPF.},
	journal = {Journal of the American Water Resources Association},
	volume = {40},
	year = {2004},
	note = {PD Plum Data},
	pages = {1365-1384},
	keywords = {HSPF, inorganic nutrients, LTER-PIE, nitrogen transport, watershed},
	doi = {10.1111/j.1752-1688.2004.tb01592.x},
	author = {Filoso,S. and Vallino, J.J and Hopkinson, C. and Rastetter, E. and Claessens, L.}
}
@article {PIE138,
	title = {N budgets and aquatic uptake in the Ipswich River basin, northeastern Massachusetts.},
	journal = {Water Resources Research},
	volume = {40},
	number = {11},
	year = {2004},
	note = {PD Plum Data},
	pages = {1-12},
	keywords = {anthropogenic, land use, LTER-PIE, nitrogen, uptake, water quality},
	doi = {10.1029/2004WR003172},
	author = {Williams, M. and Hopkinson, C. and Rastetter, E. and Vallino, J.}
}
@article {PIE130,
	title = {Role of wetlands and developed land use on dissolved organic nitrogen concentrations and DON / TDN in northeastern U.S. rivers and streams},
	journal = {Limnology and Oceanography},
	volume = {49},
	year = {2004},
	note = {Grad},
	pages = {910-918},
	keywords = {dissolved organic nitrogen, land use, LTER-PIE, watershed, wetlands},
	doi = {10.4319/lo.2004.49.4.0910},
	author = {Pellerin, B.A. and Wollheim, W. and Hopkinson, C. and McDowell, W. and Williams, M. and Vorosmarty, C. and Daley, M.}
}
@proceedings {PIE149,
	title = {The Salt Marsh Geomorphology: Physical and Ecological Effects on Landform},
	journal = {AGU Chapman Conference},
	volume = {86},
	year = {2004},
	note = {PI Plum Data},
	month = {October 9-13, 2004},
	pages = {57-58},
	publisher = {EOS},
	address = {Halifax, Nova Scotia, Canada},
	keywords = {disturbance, geomorphology, LTER-PIE, organic matter, salt marsh},
	author = {Fagherazzi, S. and Torres, R. and Hopkinson, C. and vanProosdij, D.}
}
@proceedings {PIE137,
	title = {Visualizing the rate at which the accuracy of a land change prediction decays.},
	journal = {Conference proceedings of the meeting of the University Consortium for Geographic Information Science},
	year = {2004},
	note = {PI Plum Data},
	pages = {29},
	address = {Silver Spring, MD},
	keywords = {land use, LTER-PIE, model, Validation},
	author = {Versluis, A.J. and Pontius, R.G., Jr. and Malizia, N.R.}
}
@article {PIE104,
	title = {Importance of metabolism in the development of salt marsh ponds.},
	journal = {Biological Bulletin},
	volume = {205},
	year = {2003},
	note = {REU},
	pages = {248-249},
	keywords = {LTER-PIE, metabolism, oxygen, salt marsh ponds},
	doi = {10.2307/1543278},
	author = {Johnston, M. E. and Cavatorta, J.R. and Hopkinson, C.S. and Valentine, V.}
}
@article {,
	title = {Modeling microbial consortiums as distributed metabolic networks},
	journal = {Biological Bulletin},
	volume = {204},
	year = {2003},
	note = {PI Plum Data},
	pages = {174-179},
	keywords = {LTER-PIE, metabolism, microbes, model},
	doi = {10.2307/1543554},
	author = {Vallino, J.J.}
}
@article {PIE93,
	title = {Patterns of sedimentation in a salt marsh-dominated estuary.},
	journal = {Biological Bulletin},
	volume = {205},
	year = {2003},
	note = {REU},
	pages = {239-241},
	keywords = {estuary, LTER-PIE, salt marsh, sedimentation},
	doi = {10.2307/1543274},
	author = {Cavatorta, J. and Johnston, M. and Hopkinson, C.S. and Valentine, V.}
}
@article {PIE99,
	title = {Pre-industrial and contemporary fluxes of nitrogen through rivers: A global assessment based on typology},
	journal = {Biogeochemistry},
	volume = {68},
	year = {2003},
	note = {PI Synthesis},
	pages = {1-35},
	keywords = {anthropogenic loading, global, inorganic nutrients, LTER-PIE, nitrogen, nitrogen budget, nitrogen yields, rivers, watershed},
	doi = {10.1023/B:BIOG.0000025742.82155.92},
	author = {Green, P.A. and Vorosmarty, C.J. and Meybeck, M. and Galloway, J.N. and Peterson, B.J. and Boyer, E.W.}
}
@article {PIE113,
	title = {Processing watershed-derived nitrogen in a well-flushed New England estuary.},
	journal = {Limnology and Oceanography},
	volume = {48},
	number = {5},
	year = {2003},
	note = {PD Coastal},
	pages = {1766-1778},
	keywords = {estuary, LTER-PIE, nitrogen, watershed},
	doi = {10.4319/lo.2003.48.5.1766},
	author = {Tobias, C.R. and Cieri, M. and Peterson, B.J. and Deegan, L.A. and Vallino, J. and Hughes, J.}
}
@article {PIE118,
	title = {Rapid screening for freshwater bacterial groups using reverse line blot hybridization},
	journal = {Applied Environmental Microbiology},
	volume = {69},
	year = {2003},
	note = {PD Plum Data},
	pages = {5875-5883},
	keywords = {bacteria, freshwater, genome, LTER-PIE},
	doi = {10.1128/AEM.69.10.5875-5883.2003},
	author = {Zwart, G. and van Hannen, E.J. and Kamst-van Agerveld, M.P. and van der Gucht, K. and Lindstrom, E.S. and Van Wichelen, J. and Lauridsen, T. and Crump, B.C. and Han, S.K. and Declerck, S.}
}
@inbook {PIE98,
	title = {The Role of Models in Addressing Coastal Eutrophication Problems},
	booktitle = {The Role of Models in Ecosystems Science},
	year = {2003},
	note = {PI Synthesis},
	pages = {327-343},
	publisher = {Princeton University Press.},
	organization = {Princeton University Press.},
	keywords = {coastal eutrophication, computer modeling, inorganic nutrients, LTER-PIE},
	author = {Giblin, A. E. and Vallino, J.},
	editor = {C.D. Canham and J.J. Cole and W.K. Lauenroth}
}
@article {PIE79,
	title = {Decomposition of dissolved organic matter from the continental margin},
	journal = {Deep Sea Research II},
	volume = {49},
	year = {2002},
	note = {PI Coastal},
	pages = {4461-4478},
	keywords = {decomposition, dissolved organic matter, LTER-PIE},
	doi = {10.1016/S0967-0645(02)00125-X},
	author = {Hopkinson, C.S. and Vallino, J. and Nolin, A.}
}
@article {PIE82,
	title = {Denitrification and the stoichiometery of nutrient regeneration in Waquoit Bay, MA},
	journal = {Estuaries},
	volume = {25},
	year = {2002},
	note = {PI Coastal},
	pages = {272-281},
	keywords = {denitrification, LTER-PIE, nutrient regeneration},
	doi = {10.1007/BF02691314},
	author = {LaMontange, M.G. and Giblin, A.E. and Valiela, I.}
}
@article {PIE91,
	title = {Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of freshwater lakes and rivers.},
	journal = {Aquatic Microbial Ecology},
	volume = {28},
	year = {2002},
	note = {PD Plum Data},
	pages = {141-155},
	keywords = {16S rRNA, bacteria, genome, lakes, LTER-PIE, population dynamics, rivers},
	doi = {10.3354/ame028141},
	author = {Zwart, G. and Crump, B.C. and Kamst-van Agterveld, M.P. and Hagen, F. and Han, S.K.}
}
@inbook {PIE56,
	title = {Group 4: Unifying concepts for integrated coastal management.},
	booktitle = {Science and Integrated Coastal Management},
	year = {2001},
	note = {PI Synthesis},
	publisher = {Dahlem University Press},
	organization = {Dahlem University Press},
	address = {Berlin},
	keywords = {coastal management, LTER-PIE},
	author = {Emeis, K. C. and Benoit, J.R. and Deegan, L. and Gilbert, A.J. and Lee, V. and Glade, J.M. and Meybeck, M. and Olsen, S.B. and Bodungen, B. Von},
	editor = {B. Von Bodungen and R. K. Turner}
}
@inbook {PIE55,
	title = {The use of models in integrated resource management in the coastal zone.},
	booktitle = {Science and Integrated Coastal Management},
	year = {2001},
	note = {PI Synthesis},
	publisher = {Dahlem University Press},
	organization = {Dahlem University Press},
	address = {Berlin},
	keywords = {coastal zone, LTER-PIE, resource management},
	author = {Deegan, L. A. and Kremer, J. and Webler, T. and Brawley, J.},
	editor = {B. Von Bodungen and R. K. Turner}
}
@article {PIE51,
	title = {Improving marine ecosystem models: Use of data assimilation and mesocosm experiments.},
	journal = {Journal of Marine Research},
	volume = {58},
	year = {2000},
	note = {PI Plum Data},
	pages = {117-164},
	keywords = {ecosystem, LTER-PIE, marine, mesocosm, model},
	doi = {10.1357/002224000321511223},
	author = {Vallino, J.}
}
@inbook {PIE40,
	title = {Linking biogeochemical processes to higher trophic levels},
	booktitle = {Estuarine Science, A Synthetic Approach to Research and Practice},
	year = {2000},
	note = {PI Synthesis},
	pages = {299-246},
	publisher = {Island Press},
	organization = {Island Press},
	address = {Washington, DC},
	keywords = {biogeochemical cycles, food web, LTER-PIE, trophic},
	author = {Kremer, J. and Kemp, W. and Giblin, A. and Valiela, I. and Seitzinger, S. and Hoffman, E.},
	editor = {J. Hobbie}
}
@inbook {PIE52,
	title = {Macro-scale models of water and nutrient flux to the coastal zone},
	booktitle = {Estuarine Science: A Synthetic Approach to Research and Practice},
	year = {2000},
	note = {PI Synthesis},
	pages = {43-80},
	publisher = {Island Press},
	organization = {Island Press},
	address = {Washington, DC},
	keywords = {coast, LTER-PIE, model, nutrient, water},
	author = {Vorosmarty, C. and Peterson, B.},
	editor = {J. Hobbie}
}
@article {PIE39,
	title = {Modeling the effects of land-use change on nitrogen biogeochemistry in the Ipswich watershed, Massachusetts},
	journal = {Biological Bulletin},
	volume = {199},
	number = {2},
	year = {2000},
	note = {REU},
	pages = {218-219},
	keywords = {Ipswich River, land use, LTER-PIE, model, nitrogen},
	doi = {10.2307/1542907},
	author = {Kirkby, R. and Claessens, L. and Hopkinson, Jr., C. and Rastetter, E. and Vallino, J.}
}
@inbook {PIE46,
	title = {Scenarios of land-use change and nitrogen release in the Ipswich watershed, Massachusetts, USA},
	booktitle = {Proceedings of the 4th International Conference on Integrating Geographic Information Systems and Environmental Modeling: Problems, prospects, and Needs for Research},
	year = {2000},
	note = {PI Plum Data},
	publisher = {Cooperative Institute for Research in Environmental Science},
	organization = {Cooperative Institute for Research in Environmental Science},
	address = {Boulder, CO},
	keywords = {land use change, LTER-PIE, nitrogen},
	author = {Pontius, R.G., Jr. and Claessens, L. and Hopkinson, C. and Marzouk, A. and Rastetter, E.B. and Schneider, L.C. and Vallino, J.},
	editor = {B. O. Parks and K. M. Clarke and M. P. Crane}
}
@article {PIE45,
	title = {Solute dynamics in storm flow of the Ipswich River Basin: Effects of land use.},
	journal = {Biological Bulletin},
	volume = {199},
	number = {2},
	year = {2000},
	note = {REU},
	pages = {219-221},
	keywords = {Ipswich River, land use, LTER-PIE, solute chemistry, storm flow},
	doi = {10.2307/1542908},
	author = {Perring, A. and Williams, M. and Hopkinson Jr., C. and Rastetter, E. and Vallino, J.}
}
@inbook {PIE29,
	title = {Synthesizing drainage basin inputs to coastal systems.},
	booktitle = {Estuarine Science: A Synthetic Approach to Research and Practice},
	year = {2000},
	note = {PI Synthesis},
	pages = {81-105},
	publisher = {Island Press},
	organization = {Island Press},
	address = {Washington, DC},
	keywords = {LTER-PIE, watershed},
	author = {Fisher, T. R. and Correll, D. and Costanza, R. and Hollibaugh, J. and Hopkinson, C. and Howarth, R. and Rabalais, N. and Richey, J. and Vorosmarty, C. and Wiegert, R.},
	editor = {J. Hobbie}
}
@article {PIE22,
	title = {Ipswich River nutrient dynamics: Preliminary assessment of a simple nitrogen-processing model},
	journal = {Biological Bulletin},
	volume = {197},
	year = {1999},
	note = {REU},
	pages = {289-290},
	keywords = {Ipswich River, land use, LTER-PIE, modeling, nutrient dynamics},
	doi = {10.2307/1542657},
	author = {Pease, K. M. and Claessens, L. and Hopkinson, C. and Rastetter, E. and Vallino, J. and Kilham, N.}
}
@article {PIE13,
	title = {Long-term effect of municipal water use on the water budget of the Ipswich River basin},
	journal = {Biological Bulletin},
	volume = {197},
	year = {1999},
	note = {REU},
	pages = {295-297},
	keywords = {Ipswich, LTER-PIE, municipal, rivers, water, water usage},
	doi = {10.2307/1542661},
	author = {Canfield, S. and Claessens, L. and Hopkinson, C.S. and Rastetter, E. and Vallino, J.}
}
@proceedings {PIE24,
	title = {A non-linear inverse technique to estimate estuarine ecosystem metabolism from whole system oxygen measurements.},
	journal = {Proceedings of the 3rd International Symposium on Ecohydraulics},
	year = {1999},
	note = {PI Plum Data},
	month = {July, 1999},
	address = {Salt Lake City, UT},
	keywords = {estuary, LTER-PIE, metabolism, model, oxygen},
	author = {Vallino, J. and Hopkinson, C.S. and Garritt, R. and Tucker, J.}
}
@inbook {PIE10,
	title = {Drainage basins, river systems, and anthropogenic change: the Chinese example},
	booktitle = {Asian Change in the Context of Global CHange: Impacts of Natural and Anthropogenic Changes in Asia on Global Biogeochemical Cycles},
	year = {1998},
	note = {PI Synthesis},
	pages = {210-244},
	publisher = {Cambridge University Press},
	organization = {Cambridge University Press},
	address = {Cambridge},
	keywords = {anthropogenic, LTER-PIE, model, river},
	author = {Vorosmarty, C. J. and Li, C. and Sun, J. and Dai, Z.},
	editor = {J. Galloway and J. Melillo}
}
@article {PIE9,
	title = {Estimation of dispersion and characteristic mixing times in Plum Island Sound Estuary},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {46},
	year = {1998},
	note = {PI Plum Data},
	pages = {333-350},
	keywords = {average age, average esidence time, average transit time, dispersion, estuary, LTER-PIE, Massachusetts coast, tidal prism},
	doi = {10.1006/ecss.1997.0281},
	author = {Vallino, J. J. and Hopkinson, C.S.}
}
@article {PIE4,
	title = {Terrestrial inputs of organic matter to coastal ecosystems: An intercomparison of chemical characteristics and bioavailability},
	journal = {Biogeochemistry},
	volume = {43},
	year = {1998},
	note = {PI Plum LMER Data},
	pages = {211-234},
	keywords = {elemental composition, lability, organic carbon, organic matter, organic nitrogen, PIE LMER, rivers},
	doi = {10.1023/A:1006016030299},
	author = {Hopkinson, C. S. and Buffam, I. and Hobbie, J. and Vallino, J. and Perdue, M. and Eversmeyer, B. and Prahl, F. and Covert, J. and Hodson, R. and Moran, M.A. and Smith, E. and Baross, J. and Crump, B. and Findlay, S. and Foreman, K.}
}
